diff --git a/README.md b/README.md new file mode 100644 index 0000000000000000000000000000000000000000..c9c77c0fbdf843a83080b8555a9a5a99e0f53e54 --- /dev/null +++ b/README.md @@ -0,0 +1,68 @@ +--- +tags: +- braindecode +- eeg +- neuroscience +- brain-computer-interface +license: unknown +--- + +# EEG Dataset + +This dataset was created using [braindecode](https://braindecode.org), a library for deep learning with EEG/MEG/ECoG signals. + +## Dataset Information + +- **Number of recordings**: 1 +- **Number of channels**: 26 +- **Sampling frequency**: 250.0 Hz +- **Data type**: Windowed (from Epochs object) +- **Number of windows**: 48 +- **Total size**: 0.04 MB +- **Storage format**: zarr + +## Usage + +To load this dataset: + +```python +from braindecode.datasets import BaseConcatDataset + +# Load dataset from Hugging Face Hub +dataset = BaseConcatDataset.from_pretrained("username/dataset-name") + +# Access data +X, y, metainfo = dataset[0] +# X: EEG data (n_channels, n_times) +# y: label/target +# metainfo: window indices +``` + +## Using with PyTorch DataLoader + +```python +from torch.utils.data import DataLoader + +# Create DataLoader for training +train_loader = DataLoader( + dataset, + batch_size=32, + shuffle=True, + num_workers=4 +) + +# Training loop +for X, y, _ in train_loader: + # X shape: [batch_size, n_channels, n_times] + # y shape: [batch_size] + # Process your batch... +``` + +## Dataset Format + +This dataset is stored in **Zarr** format, optimized for: +- Fast random access during training (critical for PyTorch DataLoader) +- Efficient compression with blosc +- Cloud-native storage compatibility + +For more information about braindecode, visit: https://braindecode.org diff --git a/dataset.zarr/.zattrs b/dataset.zarr/.zattrs new file mode 100644 index 0000000000000000000000000000000000000000..32e035f5c99d0a6a2f95c482991d514adcaaa9f0 --- /dev/null +++ b/dataset.zarr/.zattrs @@ -0,0 +1,6 @@ +{ + "braindecode_version": "1.0", + "dataset_type": "WindowsDataset", + "n_datasets": 1, + "window_kwargs": "[[\"create_windows_from_events\", {\"infer_mapping\": true, \"infer_window_size_stride\": true, \"trial_start_offset_samples\": 0, \"trial_stop_offset_samples\": 0, \"window_stride_samples\": null, \"drop_last_window\": false, \"preload\": false, \"drop_bad_windows\": true, \"picks\": null, \"reject\": null, \"flat\": null, \"on_missing\": \"error\", \"accepted_bads_ratio\": 0.0, \"verbose\": \"error\", \"use_mne_epochs\": true, \"mapping\": {\"feet\": 0, \"left_hand\": 1, \"right_hand\": 2, \"tongue\": 3}, \"window_size_samples\": null}]]" +} \ No newline at end of file diff --git a/dataset.zarr/.zgroup b/dataset.zarr/.zgroup new file mode 100644 index 0000000000000000000000000000000000000000..3b7daf227c1687f28bc23b69f183e27ce9a475c1 --- /dev/null +++ b/dataset.zarr/.zgroup @@ -0,0 +1,3 @@ +{ + "zarr_format": 2 +} \ No newline at end of file diff --git a/dataset.zarr/recording_0/.zattrs b/dataset.zarr/recording_0/.zattrs new file mode 100644 index 0000000000000000000000000000000000000000..5a224606ae536db74c6f9827e9707467592a5b9d --- /dev/null +++ b/dataset.zarr/recording_0/.zattrs @@ -0,0 +1,5 @@ +{ + "description": "{\"subject\":1,\"session\":\"0train\",\"run\":\"0\"}", + "info": "{\"ch_names\": [\"Fz\", \"FC3\", \"FC1\", \"FCz\", \"FC2\", \"FC4\", \"C5\", \"C3\", \"C1\", \"Cz\", \"C2\", \"C4\", \"C6\", \"CP3\", \"CP1\", \"CPz\", \"CP2\", \"CP4\", \"P1\", \"Pz\", \"P2\", \"POz\", \"EOG1\", \"EOG2\", \"EOG3\", \"stim\"], \"sfreq\": 250.0, \"ch_types\": [\"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eeg\", \"eog\", \"eog\", \"eog\", \"stim\"], \"lowpass\": 125.0, \"highpass\": 0.0}", + "metadata": "{\"columns\":[\"i_window_in_trial\",\"i_start_in_trial\",\"i_stop_in_trial\",\"target\"],\"index\":[0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47],\"data\":[[0,750,1750,3],[0,2753,3753,0],[0,4671,5671,2],[0,6623,7623,1],[0,8631,9631,1],[0,10742,11742,2],[0,12659,13659,0],[0,14709,15709,3],[0,16640,17640,2],[0,18638,19638,0],[0,20544,21544,1],[0,22439,23439,1],[0,24411,25411,1],[0,26355,27355,3],[0,28322,29322,2],[0,30442,31442,2],[0,32450,33450,1],[0,34516,35516,1],[0,36552,37552,0],[0,38618,39618,1],[0,40688,41688,2],[0,42768,43768,3],[0,44680,45680,3],[0,46711,47711,0],[0,48664,49664,1],[0,50625,51625,3],[0,52729,53729,3],[0,54733,55733,2],[0,56708,57708,3],[0,58734,59734,3],[0,60805,61805,2],[0,62912,63912,1],[0,65004,66004,2],[0,67095,68095,0],[0,69138,70138,0],[0,71202,72202,0],[0,73222,74222,3],[0,75194,76194,0],[0,77157,78157,1],[0,79082,80082,3],[0,81163,82163,2],[0,83141,84141,0],[0,85131,86131,2],[0,87250,88250,0],[0,89156,90156,3],[0,91084,92084,2],[0,93198,94198,0],[0,95257,96257,1]]}" +} \ No newline at end of file diff --git a/dataset.zarr/recording_0/.zgroup b/dataset.zarr/recording_0/.zgroup new file mode 100644 index 0000000000000000000000000000000000000000..3b7daf227c1687f28bc23b69f183e27ce9a475c1 --- /dev/null +++ b/dataset.zarr/recording_0/.zgroup @@ -0,0 +1,3 @@ +{ + "zarr_format": 2 +} \ No newline at end of file diff --git a/dataset.zarr/recording_0/data/.zarray b/dataset.zarr/recording_0/data/.zarray new file mode 100644 index 0000000000000000000000000000000000000000..3c0c12c2bc7c72ad6afc2e8c5bd42949e22a5b3c --- /dev/null +++ b/dataset.zarr/recording_0/data/.zarray @@ -0,0 +1,24 @@ +{ + "chunks": [ + 1, + 26, + 1000 + ], + "compressor": { + "blocksize": 0, + "clevel": 5, + "cname": "zstd", + "id": "blosc", + "shuffle": 1 + }, + "dtype": "