One thing I have noticed (or lack there of) is any reference to your First Officer. Is he simply one of your BO's? Does the First Officer really play no part in the grand scheme of things as your maverick Captain has to go on EVERY Landing/boarding party and touch and click everything anyhow? Shouldn't there be an option to assign one of your BO's the responsibility of being a First Officer and gain a benifit for that? Maybe give him that title in that title drop down box at the very least? It just seems odd you are the Captain AND First Officer and everyone else is merely crew.
Whatever NPC thinks they have the right to call themselves first officer... Which apparently is everyone.
This missions it's that human science officer, that missions it's the Ferengi tactical officer... These two missions Chats Klingon science officer felt like being the first officer.