@Test
public void testSingleSampleDeletion() {

    Stream<VariantContext> variantContexts = TestVcfParser.forSamples("Sample")
            .parseVariantContext("1\t123256213\t.\tCA\tC\t100.15\tPASS\tGENE=RBM8A\tGT:DP\t0/1:33");
    List<VariantEvaluation> variants = instance.createVariantEvaluations(variantContexts)
            .peek(printVariant())
            .collect(toList());
    assertThat(variants.size(), equalTo(1));
    VariantEvaluation variantEvaluation = variants.get(0);
    System.out.println(variantEvaluation);
    assertThat(variantEvaluation.getChromosome(), equalTo(1));
    assertThat(variantEvaluation.getChromosomeName(), equalTo("1"));
    assertThat(variantEvaluation.getPosition(), equalTo(123256213));
    assertThat(variantEvaluation.getRef(), equalTo("CA"));
    assertThat(variantEvaluation.getAlt(), equalTo("C"));
    assertThat(variantEvaluation.hasTranscriptAnnotations(), is(true));
    System.out.println(variantEvaluation.getTranscriptAnnotations());
    assertThat(variantEvaluation.getGeneId(), equalTo("9939"));
    assertThat(variantEvaluation.getGeneSymbol(), equalTo("RBM8A"));
    assertThat(variantEvaluation.getVariantEffect(), equalTo(VariantEffect.INTERGENIC_VARIANT));
    assertThat(variantEvaluation.getSampleGenotypes(), equalTo(ImmutableMap.of("Sample", SampleGenotype.of(AlleleCall.REF, AlleleCall.ALT))));
}