@Test public void pseudoAtomReplacement() throws Exception {

    try (MDLV3000Reader reader = new MDLV3000Reader(getClass().getResourceAsStream("pseudoAtomReplacement.mol"))) {
        IAtomContainer container = reader.read(new org.openscience.cdk.AtomContainer(0, 0, 0, 0));
        for (IAtom atom : container.getBond(9).atoms()) {
            Assert.assertTrue(container.contains(atom));
        }
    }
}