@Test
public void test2() throws java.lang.Exception {

    IAtomContainer mol = TestMoleculeFactory.makeAlphaPinene();
    IAtomContainer frag1 = TestMoleculeFactory.makeCyclohexane(); // no double bond in ring
    AtomContainerManipulator.percieveAtomTypesAndConfigureAtoms(mol);
    AtomContainerManipulator.percieveAtomTypesAndConfigureAtoms(frag1);
    Aromaticity.cdkLegacy().apply(mol);
    Aromaticity.cdkLegacy().apply(frag1);
    if (standAlone) {
        System.out.println("Cyclohexane is a subgraph of alpha-Pinen: " + CDKMCS.isSubgraph(mol, frag1, true));
    } else {
        Assert.assertTrue(!CDKMCS.isSubgraph(mol, frag1, true));
    }
}