Among Ike's objectives in not directly confronting McCarthy was to prevent McCarthy from dragging the Atomic Energy Commission (AEC) into McCarthy's witch hunt for communists, which would interfere with, and perhaps delay, the AEC's important work on H-bombs. The administration had discovered through its own investigations that one of the leading scientists on the AEC, J. Robert Oppenheimer, had urged that the H-bomb work be delayed. Eisenhower removed him from the agency and revoked his security clearance, though he knew this would create fertile ground for McCarthy.
What organization did Eisenhower want to keep from being one of McCarthy's targets?
Atomic Energy Commission