  We study a new baryogenesis scenario in a class of braneworld models with low
fundamental scale, which typically have difficulty with baryogenesis. The
scenario is characterized by its minimal nature: the field content is that of
the Standard Model and all interactions consistent with the gauge symmetry are
admitted. Baryon number is violated via a dimension-6 proton decay operator,
suppressed today by the mechanism of quark-lepton separation in extra
dimensions; we assume that this operator was unsuppressed in the early Universe
due to a time-dependent quark-lepton separation. The source of CP violation is
the CKM matrix, in combination with the dimension-6 operators. We find that
almost independently of cosmology, sufficient baryogenesis is nearly impossible
in such a scenario if the fundamental scale is above 100 TeV, as required by an
unsuppressed neutron-antineutron oscillation operator. The only exception
producing sufficient baryon asymmetry is a scenario involving
out-of-equilibrium c quarks interacting with equilibrium b quarks.
