  Real networks often form interacting parts of larger and more complex
systems. Examples can be found in different domains, ranging from the Internet
to structural and functional brain networks. Here, we show that these multiplex
systems are not random combinations of single network layers. Instead, they are
organized in specific ways dictated by hidden geometric correlations between
the individual layers. We find that these correlations are strong in different
real multiplexes, and form a key framework for answering many important
questions. Specifically, we show that these geometric correlations facilitate:
(i) the definition and detection of multidimensional communities, which are
sets of nodes that are simultaneously similar in multiple layers; (ii) accurate
trans-layer link prediction, where connections in one layer can be predicted by
observing the hidden geometric space of another layer; and (iii) efficient
targeted navigation in the multilayer system using only local knowledge, which
outperforms navigation in the single layers only if the geometric correlations
are sufficiently strong. Our findings uncover fundamental organizing principles
behind real multiplexes and can have important applications in diverse domains.
