  We model the effects of confinement on the stable self-organized patterns
obtained in the non-equilibrium steady states of mixtures of molecular motors
and microtubules. In experiments [Nedelec et al. Nature, 389, 305 (1997);
Surrey et al., Science, 292, 1167 (2001)] performed in a quasi-two-dimensional
confined geometry, microtubules are oriented by complexes of motor proteins.
This interaction yields a variety of patterns, including arangements of asters,
vortices and disordered configurations. We model this system via a
two-dimensional vector field describing the local coarse-grained microtubule
orientation and two scalar density fields associated to molecular motors. These
scalar fields describe motors which either attach to and move along
microtubules or diffuse freely within the solvent. Transitions between single
aster, spiral and vortex states are obtained as a consequence of confinement,
as parameters in our model are varied. We also obtain other novel states,
including ``outward asters'', distorted vortices and lattices of asters on
confined systems. We calculate the steady state distribution of bound and free
motors in aster and vortex configurations of microtubules and compare these to
our simulation results, providing qualitative arguments for the stability of
different patterns in various regimes of parameter space. We also study the
role of crowding or ``saturation'' effects on the density profiles of motors in
asters, discussing the role of such effects in stabilizing single asters.
