  We theoretically investigate the transport properties of a molecule embedded
in one arm of a mesoscopic Aharonov-Bohm interferometer. Due to the presence of
phonons the molecule level position ($\epsilon_d$) and the electron-electron
interaction ($U$) undergo a \emph{polaronic shift} which affects dramatically
the electronic transport through the molecular junction. When the
electron-phonon interaction is weak the linear conductance presents Fano-line
shapes as long as the direct channel between the electrodes is opened. The
observed Fano resonances in the linear conductance are originated from the
interference between the spin Kondo state and the direct path. For strong
enough electron-phonon interaction, the electron-electron interaction is
renormalized towards negative values, {\it i.e.} becomes effectively
attractive. This scenario favors fluctuations between the empty and doubly
occupied charge states and therefore promotes a charge Kondo effect. However,
the direct path between the contacts breaks the electron-hole symmetry which
can efficiently suppress this charge Kondo effect. Nevertheless, we show that a
proper tuning of the gate voltage is able to revive the Kondo resonance. Our
results are obtained by using the Numerical Renormalization approximation to
compute the electronic spectral function and the linear conductance.
