  We demonstrate initialization by joint measurement of two transmon qubits in
3D circuit quantum electrodynamics. Homodyne detection of cavity transmission
is enhanced by Josephson parametric amplification to discriminate the two-qubit
ground state from single-qubit excitations non-destructively and with 98.1%
fidelity. Measurement and postselection of a steady-state mixture with 4.7%
residual excitation per qubit achieve 98.8% fidelity to the ground state, thus
outperforming passive initialization.
