  We present full renormalisation group equations for the MSSM with R-parity
violation, including all soft supersymmetry breaking terms. The inclusion of
dimensionless R-parity violating couplings can generate many possible low
energy effects through the generation of off-diagonal soft masses violating
lepton and quark flavour, and through the generation of lepton-Higgs mixing. We
discuss the relation between the weak and unification scale R-parity violation
and study the effects on neutrino mass generation and $\mu\to e\gamma$.
