  We compute the contribution from clusters of galaxies to the diffuse neutrino
and $\gamma-$ray background. Due to their unique magnetic-field configuration,
cosmic rays (CRs) with energy $\leq10^{17}$ eV can be confined within these
structures over cosmological time scales, and generate secondary particles,
including neutrinos and $\gamma-$rays, through interactions with the background
gas and photons. We employ three-dimensional (3D) cosmological
magnetohydrodynamical (MHD) simulations of structure formation to model the
turbulent intergalactic and intracluster media. We propagate CRs in these
environments using multi-dimensional Monte Carlo simulations across different
redshifts (from $z \sim 5$ to $z = 0$), considering all relevant photohadronic,
photonuclear, and hadronuclear interactions. We also include the cosmological
evolution of the CR sources. We find that for CRs injected with a spectral
index $1.5 - 2.7$ and cutoff energy $E_\text{max} = 10^{16} - 10^{17}$~eV,
clusters contribute to a substantial fraction to the diffuse fluxes observed by
the IceCube and Fermi-LAT, and most of the contribution comes from clusters
with $M > 10^{14} \, M_{\odot}$ and redshift $z < 0.3$. We also estimated the
multimessenger contributions from the local galaxy cluster.
