  In previous works [physics/0204035, physics/0404052, physics/0509126] a
procedure was described for dividing the $3 \times N$-dimensional
conformational space of a molecular system into a number of discrete cells,
this partition allowed the building of a combinatorial structure from data
sampled in molecular dynamics trajectories: the graph of cells, that encodes
the set of cells in conformational space that are visited by the system in its
thermal wandering. Here we outline a set of procedures for extracting useful
information from this structure: 1st) interesting regions in the volume
occupied by the system in conformational space can be bounded by a polyhedral
cone whose faces are determined empirically from a set of relations between the
coordinates of the molecule, 2nd) it is also shown that this cone can be
decomposed into a hierarchical set of smaller cones, 3rd) the set of cells in a
cone can be encoded by a simple combinatorial sequence.
