  IT based scientific research requires high computational resources. The
limitation on funding and infrastructure led the high performance computing era
from supercomputer to cluster and grid computing technology. Parallel
application running well on cluster computer as well as supercomputer, one of
the type is embarrassingly parallel application. Many scientist loves EP
because it doesn't need any sophisticated technique but gives amazing
performance. This paper discuss the bioinformatics research that used
embarrassingly application and show its performance on cluster computer.
