  Potassium (K-) channels catalyze K+ ion permeation across cellular membranes
while simultaneously discriminating their permeation over Na+ ions by more than
a factor of a thousand. Structural studies show bare K+ ions occupying the
narrowest channel regions in a state of high coordination by all 8 surrounding
oxygen ligands from the channel walls. As in most channels, the driving force
for selectivity occurs when one ion is preferentially stabilized or
destabilized by the channel compared to water. In the common view of mechanism,
made vivid by textbook graphics, the driving force for selectivity in K-
channels arises by a fit, whereby the channel induces K+ ions to leave water by
offering an environment like water for K+, in terms of both energy and local
structure. The implication that knowledge of local ion coordination in a liquid
environment translates to design parameters in a protein ion channel, producing
similar energetic stabilities, has gone unchallenged, presumably due in part to
lack of consensus regarding ion coordination structures in liquid water.
Growing evidence that smaller numbers and different arrangements of ligands
coordinate K+ ions in liquid water, however, raises new questions regarding
mechanism: how and why should ion coordination preferences change, and how does
that alter the current notions of ion selectivity? Our studies lead to a new
channelcentric paradigm for the mechanism of K+ ion channel selectivity.
Because the channel environment is not liquid-like, the channel necessarily
induces local structural changes in ion coordination preferences that enable
structural and energetic differentiation between ions.
