  We study generic intersection (or web) of vortices with instantons inside,
which is a 1/4 BPS state in the Higgs phase of five-dimensional N=1
supersymmetric U(Nc) gauge theory on R_t \times (C^\ast)^2 \simeq R^{2,1}
\times T^2 with Nf=Nc Higgs scalars in the fundamental representation. In the
case of the Abelian-Higgs model (Nf=Nc=1), the intersecting vortex sheets can
be beautifully understood in a mathematical framework of amoeba and tropical
geometry, and we propose a dictionary relating solitons and gauge theory to
amoeba and tropical geometry. A projective shape of vortex sheets is described
by the amoeba. Vortex charge density is uniformly distributed among vortex
sheets, and negative contribution to instanton charge density is understood as
the complex Monge-Ampere measure with respect to a plurisubharmonic function on
(C^\ast)^2. The Wilson loops in T^2 are related with derivatives of the Ronkin
function. The general form of the Kahler potential and the asymptotic metric of
the moduli space of a vortex loop are obtained as a by-product. Our discussion
works generally in non-Abelian gauge theories, which suggests a non-Abelian
generalization of the amoeba and tropical geometry.
