  Modulo a homogeneous degree of freedom and a global constraint, the linearly
polarised Gowdy $T^3$ cosmologies are equivalent to a free scalar field
propagating in a fixed nonstationary background. Recently, a new field
parameterisation was proposed for the metric of the Gowdy spacetimes such that
the associated scalar field evolves in a flat background in 1+1 dimensions with
the spatial topology of $S^1$, although subject to a time dependent potential.
Introducing a suitable Fock quantisation for this scalar field, a quantum
theory was constructed for the Gowdy model in which the dynamics is implemented
as a unitary transformation. A question that was left open is whether one might
adopt a different, nonequivalent Fock representation by selecting a distinct
complex structure. The present work proves that the chosen Fock quantisation is
in fact unique (up to unitary equivalence) if one demands unitary
implementation of the dynamics and invariance under the group of constant $S^1$
translations. These translations are precisely those generated by the global
constraint that remains on the Gowdy model. It is also shown that the proof of
uniqueness in the choice of complex structure can be applied to more general
field dynamics than that corresponding to the Gowdy cosmologies.
