  We investigate the open mirror symmetry of certain non-complete intersection
Calabi- Yau 3-folds, so called pfaffian Calabi-Yau. We perform the prediction
of the number of disk invariants of several examples by using the direct
integration method proposed recently and the open mirror symmetry. We treat
several pfaffian Calabi-Yau 3-folds in $\mathbb{P}^6$ and branes with two
discrete vacua. Some models have the two special points in its moduli space,
around both of which we can consider different A-model mirror partners. We
compute disc invariants for both cases. This study is the first application of
the open mirror symmetry to the compact non-complete intersections in toric
variety.
