  We study atomic line diagnostics of the inner regions of protoplanetary disks
with our model of X-ray irradiated disk atmospheres which was previously used
to predict observable levels of the NeII and NeIII fine-structure transitions
at 12.81 and 15.55mum. We extend the X-ray ionization theory to sulfur and
calculate the fraction of sulfur in S, S+, S2+ and sulfur molecules. For the
D'Alessio generic T Tauri star disk, we find that the SI fine-structure line at
25.55mum is below the detection level of the Spitzer Infrared Spectrometer
(IRS), in large part due to X-ray ionization of atomic S at the top of the
atmosphere and to its incorporation into molecules close to the mid-plane. We
predict that observable fluxes of the SII 6718/6732AA forbidden transitions are
produced in the upper atmosphere at somewhat shallower depths and smaller radii
than the neon fine-structure lines. This and other forbidden line transitions,
such as the OI 6300/6363AA and the CI 9826/9852AA lines, serve as complementary
diagnostics of X-ray irradiated disk atmospheres. We have also analyzed the
potential role of the low-excitation fine-structure lines of CI, CII, and OI,
which should be observable by SOFIA and Herschel.
