  We study theoretically Doppler laser-cooling of a cluster of 2-level atoms
confined in a linear ion trap. Using several consecutive steps of averaging we
derive, from the full quantum mechanical master equation, an equation for the
total mechanical energy of the one dimensional crystal, defined on a
coarse-grained energy scale whose grid size is smaller than the linewidth of
the electronic transition. This equation describes the cooling dynamics for an
arbitrary number of ions and in the quantum regime. We discuss the validity of
the ergodic assumption (i.e. that the phase space distribution is only a
function of energy). From our equation we derive the semiclassical limit (i.e.
when the mechanical motion can be treated classically) and the Lamb-Dicke limit
(i.e. when the size of the mechanical wave function is much smaller than the
laser wavelength). We find a Fokker-Planck equation for the total mechanical
energy of the system, whose solution is in agreement with previous analytical
calculations which were based on different assumptions and valid only in their
specific regimes. Finally, in the classical limit we derive an analytic
expression for the average coupling, by light scattering, between motional
states at different energies.
