  We theoretically investigate the transmission dynamics of coherent matter
wave pulses across finite optical lattices in both the linear and the nonlinear
regimes. The shape and the intensity of the transmitted pulse are found to
strongly depend on the parameters of the incident pulse, in particular its
velocity and density: a clear physical picture for the main features observed
in the numerical simulations is given in terms of the atomic band dispersion in
the periodic potential of the optical lattice. Signatures of nonlinear effects
due the atom-atom interaction are discussed in detail, such as atom optical
limiting and atom optical bistability. For positive scattering lengths, matter
waves propagating close to the top of the valence band are shown to be subject
to modulational instability. A new scheme for the experimental generation of
narrow bright gap solitons from a wide Bose-Einstein condensate is proposed:
the modulational instability is seeded in a controlled way starting from the
strongly modulated density profile of a standing matter wave and the solitonic
nature of the generated pulses is checked from their shape and their
collisional properties.
