  Ontology matching (OM) entails the identification of semantic relationships
between concepts within two or more knowledge graphs (KGs) and serves as a
critical step in integrating KGs from various sources. Recent advancements in
deep OM models have harnessed the power of transformer-based language models
and the advantages of knowledge graph embedding. Nevertheless, these OM models
still face persistent challenges, such as a lack of reference alignments,
runtime latency, and unexplored different graph structures within an end-to-end
framework. In this study, we introduce a novel self-supervised learning OM
framework with input ontologies, called LaKERMap. This framework capitalizes on
the contextual and structural information of concepts by integrating implicit
knowledge into transformers. Specifically, we aim to capture multiple
structural contexts, encompassing both local and global interactions, by
employing distinct training objectives. To assess our methods, we utilize the
Bio-ML datasets and tasks. The findings from our innovative approach reveal
that LaKERMap surpasses state-of-the-art systems in terms of alignment quality
and inference time. Our models and codes are available here:
https://github.com/ellenzhuwang/lakermap.
