  This is a vignette for the R package eggCounts version 2.0. The package
implements a suite of Bayesian hierarchical models dealing with faecal egg
count reductions. The models are designed for a variety of practical
situations, including individual treatment efficacy, zero inflation, small
sample size (less than 10) and potential outliers. The functions are intuitive
to use and their output are easy to interpret, such that users are protected
from being exposed to complex Bayesian hierarchical modelling tasks. In
addition, the package includes plotting functions to display data and results
in a visually appealing manner. The models are implemented in Stan modelling
language, which provides efficient sampling technique to obtain posterior
samples. This vignette briefly introduces different models, and provides a
short walk-through analysis with example data.
