  A primary objective of quantum computation is to efficiently simulate quantum
physics. Scientifically and technologically important quantum Hamiltonians
include those with spin-$s$, vibrational, photonic, and other bosonic degrees
of freedom, i.e. problems composed of or approximated by $d$-level particles
(qudits). Recently, several methods for encoding these systems into a set of
qubits have been introduced, where each encoding's efficiency was studied in
terms of qubit and gate counts. Here, we build on previous results by including
effects of hardware connectivity. To study the number of SWAP gates required to
Trotterize commonly used quantum operators, we use both analytical arguments
and automatic tools that optimize the schedule in multiple stages. We study the
unary (or one-hot), Gray, standard binary, and block unary encodings, with
three connectivities: linear array, ladder array, and square grid. Among other
trends, we find that while the ladder array leads to substantial efficiencies
over the linear array, the advantage of the square over the ladder array is
less pronounced. These results are applicable in hardware co-design and in
choosing efficient qudit encodings for a given set of near-term quantum
hardware. Additionally, this work may be relevant to the scheduling of other
quantum algorithms for which matrix exponentiation is a subroutine.
