  Phenomenological studies of Flavored Dark Matter (FDM) models often have to
assume a near-diagonal flavor structure in the coupling matrix in order to
remain consistent with bounds from flavor violating processes. In this paper we
show that for Lepton FDM, such a structure can naturally arise from an extra
dimensional setup. The extra dimension is taken to be flat, with the dark
matter and mediator fields confined to a brane on one end of the extra
dimension, and the Higgs field to a brane on the other end. The Standard Model
fermion and gauge fields are the zero modes of corresponding bulk fields with
appropriate boundary conditions. Global flavor symmetries exist in the bulk and
on the FDM brane, while they are broken on the Higgs brane. Flavor violating
processes arise due to the misalignment of bases for which the interactions on
the two branes are diagonalized, and their size can be controlled by a choice
of the lepton profiles along the extra dimension. By studying the parameter
space for the model, we show that when relic abundance and indirect detection
constraints are satisfied, the rates for flavor violating processes such as
$\mu\to e\gamma$ remain far below the experimental limits.
