  We demonstrate that the classical dimer model defined on a toroidal hexagonal
lattice acquires holonomy phases in the thermodynamic limit. When all
activities are equal the lattice sizes must be considered mod 6 in which case
the finite size corrections to the bulk partition function correspond to a
massless Dirac Fermion in the presence of a flat connection with nontrivial
holonomy. For general bond activities we find that the phase transition in this
model is a topological one, where the torus degenerates and its modular
parameter becomes real at the critical temperature. We argue that these
features are generic to bipartite dimer models and we present a more general
lattice whose continuum partition function is that of a massive Dirac Fermion.
