Research shows how hungry bacteria sense nutrients in their environment

University of Leicester researchers have shed new light on how bacteria sense nutrients in their environment – which could provide important knowledge in the development of drugs and antibiotics to combat a range of diseases including tuberculosis.

The research team, led by Dr Helen O’Hare from the University of Leicester’s Department of Infection, Immunity and Inflammation, has identified functions of a specific protein (Kinase G) that allow groups of bacteria such as Mycobacterium tuberculosis to detect amino acids in their surroundings, allowing the bacteria to regulate their metabolism in response to the available nutrients.

This protein is found in a large and important group of bacteria that includes the causative agent of tuberculosis in humans, as well as bacteria important for food and antibiotic production. The research identified the types of nutrients that can be sensed (aspartate and glutamate) as well as the sensor protein that recognises the nutrients.

This understanding of how bacteria detect and respond to amino acids in their local environment provides useful information to scientists in terms of understanding how bacteria function and how drugs could target specific proteins.

“Serine threonine protein kinases are found in all organisms, from humans to bacteria, but they are less well understood in bacteria,” says Dr O’Hare. “The findings represent one of the first instances in bacteria where it has been possible to identify the stimuli that trigger signaling.

“A bacterial pathogen can ‘taste’ the same amino acids that humans can. The sensor has a similar structure to human glutamate receptors but the way the information is transmitted into the bacterial cell is different and involves a different set of proteins, unlike signaling systems that have been studied previously.

“The research brings understanding about how a pathogen can sense the nutrients in its niches in the human body, but also broad understanding of how non-pathogenic bacteria sense their surroundings.”

The team was able to work out which proteins helped bacteria sense nutrients by deleting specific genes for signaling proteins from a bacterial genome. With the genes removed, they found that this disrupted the ability of the bacteria to sense nutrients, confirming the function of the genes.

Using X-ray crystallography at the Diamond Light Source at Harwell, they were then able to determine the structure of the sensor protein and predict which other bacteria may sense amino acids in the same way.

“Our findings have broader significance for other Actinobacterial pathogens, such as non-tuberculous Mycobacteria, as well as Actinobacteria used to produce billions of dollars of amino acids and antibiotics every year,” Dr O’Hare added.

Financial support for the research was provided by the Department of Biotechnology, Ministry of Science and Technology, Government of India, the Commonwealth Scholarship Commission and the Medical Research Council.

The paper, ‘An aspartate-specific solute-binding protein regulates protein kinase G activity to control glutamate metabolism in Mycobacteria’ is published in the journal mBio and is available here: http://mbio.asm.org/content/9/4/e00931-18.abstract