Multiset \kmer counting for measuring the distance between numerous metagenomic datasets
Gaëtan Benoit
Pierre Peterlongo
Mahendra Mariadassou
%Erwan Drezen
Sophie Schbath
Dominique Lavenier
Claire Lemaitre
main.tex








%TODO
% - faire un graphe de corrélation des distances compositions / distances k-mers
% - faire une analyse discriminante (DA) pour vérifier que les groupes sont retrouvés
% - calculer les ARI (adjusted Rand Index, score de similarité entre classification) pour montrer que le clustering donné par les distances k-mers est cohérent avec une typologie connue (entérotype, body part).
% - impact de la longueur des k-mers: calculer une valeur numérique par taille k de kmer (ARI ou corrélation entre distances) et représenter l'évolution de cette valeur en fonction de k














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%\title{Multiple comparative metagenomics using multiset \kmer counting}
%\title{Multiset \kmer counting for measuring the distance between numerous metagenomic datasets}
%\author{Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou,
%Erwan Drezen, Sophie Schbath, \\ Dominique Lavenier, Claire Lemaitre}

%\date{October 2015}























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