IMatrixView matrixView
gitools-core/src/main/java/org/gitools/matrix/model/MatrixView.java
this.contents = matrixView.getContents();
		this.visibleRows = matrixView.getVisibleRows();
		this.visibleColumns = matrixView.getVisibleColumns();
		this.selectedRows = matrixView.getSelectedRows();
		this.selectedColumns = matrixView.getSelectedColumns();
		this.selectionLeadRow = matrixView.getLeadSelectionRow();
		this.selectionLeadColumn = matrixView.getLeadSelectionColumn();
		this.selectedPropertyIndex = matrixView.getSelectedPropertyIndex();

		selectedColumnsBitmap = newSelectionBitmap(contents.getColumnCount());
		selectedRowsBitmap = newSelectionBitmap(contents.getRowCount());
public MatrixView(IMatrixView matrixView)
T x
gitools-core/src/main/java/org/gitools/utils/SerialClone.java
XStream xstream = new XStream();
		String xml = xstream.toXML(x);
		return (T) xstream.fromXML(xml);
T xclone(T x)
List<BaseAction> actions
gitools-ui-platform/src/main/java/org/gitools/ui/platform/actions/ActionSet.java
this(actions.toArray(new BaseAction[actions.size()]));
public ActionSet(List<BaseAction> actions)
gitools-ui/src/main/java/org/gitools/ui/actions/file/SaveAction.java
@Override
			public void run(IProgressMonitor monitor) {
				currentEditor.doSave(monitor);
new JobRunnable()
Heatmap heatmap  List<BaseAction> externalToolbarActions
gitools-ui/src/main/java/org/gitools/ui/heatmap/editor/HeatmapEditor.java
this.externalToolbarActions = externalToolbarActions;
		//final IMatrixView matrixView = getMatrixView();
		List<BaseAction> actions = new ArrayList<BaseAction>(toolBarAS.getActions());
		if (externalToolbarActions != null)
			actions.addAll(externalToolbarActions);
		ActionSet as = new ActionSet(actions);
		
		JToolBar toolBar = ActionSetUtils.createToolBar(as);

		add(toolBar, BorderLayout.NORTH);

	@Override
	public void doSave(IProgressMonitor monitor) {
		File file = null; //getEditorFile();

		try {
			PersistenceManager.getDefault().store(file, getModel(), monitor);
public HeatmapEditor(Heatmap heatmap, List<BaseAction> externalToolbarActions)
gitools-ui/src/main/java/org/gitools/ui/intogen/dialog/IntogenOncomodulesDialog.java
@Override public void run() {
				try {
					rcontext.navigate(new URL(Settings.getDefault().getIntogenOncomodulesUrl()), "_this");
new Runnable()
gitools-ui/src/main/java/org/gitools/ui/settings/Settings.java
return intogenOncomodulesUrl;
String getIntogenOncomodulesUrl()
String intogenOncomodulesUrl
gitools-ui/src/main/java/org/gitools/ui/settings/Settings.java
this.intogenOncomodulesUrl = intogenOncomodulesUrl;
void setIntogenOncomodulesUrl(String intogenOncomodulesUrl)
matrix instanceof DoubleMatrix
gitools-ui/src/main/java/org/gitools/ui/actions/file/OpenHeatmapAction.java
figure.setShowGrid(false);
else if (matrix instanceof DoubleMatrix)
matrix instanceof ObjectMatrix
gitools-ui/src/main/java/org/gitools/ui/actions/file/OpenHeatmapAction.java
ElementDecorator decorator =
							ElementDecoratorFactory.create(
									ElementDecoratorNames.PVALUE,
									matrix.getCellAdapter());
						figure.setCellDecorator(decorator);
else if (matrix instanceof ObjectMatrix)