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FlowFinal

PyTorch
protein-generation
antimicrobial-peptides
flow-matching
protein-design
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FlowFinal

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Add complete dataset sequences
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Add mic_summary_20250829.json
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Add apex_results_all_cfg_comparison_20250829.json
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Add apex_results_very_strong_cfg_150_20250829.json
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Add apex_results_strong_cfg_75_20250829.json
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Add apex_results_weak_cfg_30_20250829.json
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Add apex_results_no_cfg_00_20250829.json
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Add decoded_sequences_very_strong_cfg_150_20250829.txt
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Add decoded_sequences_strong_cfg_75_20250829.txt
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Add decoded_sequences_weak_cfg_30_20250829.txt
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Add decoded_sequences_no_cfg_00_20250829.txt
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Add generated_amps_best_model_very_strong_cfg_20250829.pt
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Add generated_amps_best_model_strong_cfg_20250829.pt
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Add generated_amps_best_model_weak_cfg_20250829.pt
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Add generated_amps_best_model_no_cfg_20250829.pt
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Add summary_statistics.csv
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Add complete_amp_results.csv
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Add hmd_amp_cfg_analysis.csv
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Add hmd_amp_detailed_results.csv
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Add generated_sequences_20250829_144923.fasta
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Add uniprotkb_AND_reviewed_true_AND_model_o_2025_08_29.fasta
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Add cfgdata.fasta
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Add combined_final.fasta
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Add all_peptides_data.json
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Add launch_full_data_training.sh
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Add training_output.log
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Add training_output_h100_max.log
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Add h100_maximized_training.log
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Add fresh_training_aug29.log
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Add latex_tables.tex
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Add supplementary_data.tex
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Add paper_results.tex
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Add amp_flow_model_best_optimized_20250829_RETRAINED.pth
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Add amp_flow_model_best_optimized.pth
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Add amp_flow_model_final_optimized.pth
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Add normalization_stats.pt
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Add final_decompressor_model.pth
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Add final_compressor_model.pth
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Add decode_and_test_sequences.py
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Add cfg_dataset.py
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Add amp_flow_training_single_gpu_full_data.py
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Add generate_amps.py
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Add final_sequence_decoder.py
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Add compressor_with_embeddings.py
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Add final_flow_model.py
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Add comprehensive model card
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initial commit
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