yzhouchen001 commited on
Commit
86f6f17
·
1 Parent(s): d9df210

cpu support only

Browse files
Files changed (1) hide show
  1. utils_app.py +4 -5
utils_app.py CHANGED
@@ -112,7 +112,7 @@ def run_inference(params):
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  )
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  model = get_model(params['model'], params)
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- print(model.hparams)
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  model.df_test_path = params['df_test_path']
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  model.external_test = True
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  model.hparams['use_fp'] = False
@@ -121,9 +121,9 @@ def run_inference(params):
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  # Init trainer
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  trainer = Trainer(
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- accelerator=params['accelerator'],
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- devices=params['devices'],
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- default_root_dir=params['experiment_dir']
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  )
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  # Prepare data module to test
@@ -142,5 +142,4 @@ if __name__ == "__main__":
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  mass_diff_thresh = 20
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  dataset_pth, subformula_dir = preprocess_spectra(mgf_path, model_choice, mass_diff_thresh=mass_diff_thresh)
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  params = setup_config(model_choice, dataset_pth, candidates_pth, subformula_dir)
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- print(params)
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  run_inference(params)
 
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  )
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  model = get_model(params['model'], params)
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+ # print(model.hparams)
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  model.df_test_path = params['df_test_path']
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  model.external_test = True
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  model.hparams['use_fp'] = False
 
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  # Init trainer
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  trainer = Trainer(
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+ accelerator='cpu',
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+ devices=1,
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+ default_root_dir=params['experiment_dir'],
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  )
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  # Prepare data module to test
 
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  mass_diff_thresh = 20
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  dataset_pth, subformula_dir = preprocess_spectra(mgf_path, model_choice, mass_diff_thresh=mass_diff_thresh)
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  params = setup_config(model_choice, dataset_pth, candidates_pth, subformula_dir)
 
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  run_inference(params)