init

.gemini/commands/speckit.analyze.toml

@@ -0,0 +1,188 @@
+description = "Perform a non-destructive cross-artifact consistency and quality analysis across spec.md, plan.md, and tasks.md after task generation."
+
+prompt = """
+---
+description: Perform a non-destructive cross-artifact consistency and quality analysis across spec.md, plan.md, and tasks.md after task generation.
+---
+
+## User Input
+
+```text
+$ARGUMENTS
+```
+
+You **MUST** consider the user input before proceeding (if not empty).
+
+## Goal
+
+Identify inconsistencies, duplications, ambiguities, and underspecified items across the three core artifacts (`spec.md`, `plan.md`, `tasks.md`) before implementation. This command MUST run only after `/speckit.tasks` has successfully produced a complete `tasks.md`.
+
+## Operating Constraints
+
+**STRICTLY READ-ONLY**: Do **not** modify any files. Output a structured analysis report. Offer an optional remediation plan (user must explicitly approve before any follow-up editing commands would be invoked manually).
+
+**Constitution Authority**: The project constitution (`.specify/memory/constitution.md`) is **non-negotiable** within this analysis scope. Constitution conflicts are automatically CRITICAL and require adjustment of the spec, plan, or tasks—not dilution, reinterpretation, or silent ignoring of the principle. If a principle itself needs to change, that must occur in a separate, explicit constitution update outside `/speckit.analyze`.
+
+## Execution Steps
+
+### 1. Initialize Analysis Context
+
+Run `.specify/scripts/bash/check-prerequisites.sh --json --require-tasks --include-tasks` once from repo root and parse JSON for FEATURE_DIR and AVAILABLE_DOCS. Derive absolute paths:
+
+- SPEC = FEATURE_DIR/spec.md
+- PLAN = FEATURE_DIR/plan.md
+- TASKS = FEATURE_DIR/tasks.md
+
+Abort with an error message if any required file is missing (instruct the user to run missing prerequisite command).
+For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\\''m Groot' (or double-quote if possible: "I'm Groot").
+
+### 2. Load Artifacts (Progressive Disclosure)
+
+Load only the minimal necessary context from each artifact:
+
+**From spec.md:**
+
+- Overview/Context
+- Functional Requirements
+- Non-Functional Requirements
+- User Stories
+- Edge Cases (if present)
+
+**From plan.md:**
+
+- Architecture/stack choices
+- Data Model references
+- Phases
+- Technical constraints
+
+**From tasks.md:**
+
+- Task IDs
+- Descriptions
+- Phase grouping
+- Parallel markers [P]
+- Referenced file paths
+
+**From constitution:**
+
+- Load `.specify/memory/constitution.md` for principle validation
+
+### 3. Build Semantic Models
+
+Create internal representations (do not include raw artifacts in output):
+
+- **Requirements inventory**: Each functional + non-functional requirement with a stable key (derive slug based on imperative phrase; e.g., "User can upload file" → `user-can-upload-file`)
+- **User story/action inventory**: Discrete user actions with acceptance criteria
+- **Task coverage mapping**: Map each task to one or more requirements or stories (inference by keyword / explicit reference patterns like IDs or key phrases)
+- **Constitution rule set**: Extract principle names and MUST/SHOULD normative statements
+
+### 4. Detection Passes (Token-Efficient Analysis)
+
+Focus on high-signal findings. Limit to 50 findings total; aggregate remainder in overflow summary.
+
+#### A. Duplication Detection
+
+- Identify near-duplicate requirements
+- Mark lower-quality phrasing for consolidation
+
+#### B. Ambiguity Detection
+
+- Flag vague adjectives (fast, scalable, secure, intuitive, robust) lacking measurable criteria
+- Flag unresolved placeholders (TODO, TKTK, ???, `<placeholder>`, etc.)
+
+#### C. Underspecification
+
+- Requirements with verbs but missing object or measurable outcome
+- User stories missing acceptance criteria alignment
+- Tasks referencing files or components not defined in spec/plan
+
+#### D. Constitution Alignment
+
+- Any requirement or plan element conflicting with a MUST principle
+- Missing mandated sections or quality gates from constitution
+
+#### E. Coverage Gaps
+
+- Requirements with zero associated tasks
+- Tasks with no mapped requirement/story
+- Non-functional requirements not reflected in tasks (e.g., performance, security)
+
+#### F. Inconsistency
+
+- Terminology drift (same concept named differently across files)
+- Data entities referenced in plan but absent in spec (or vice versa)
+- Task ordering contradictions (e.g., integration tasks before foundational setup tasks without dependency note)
+- Conflicting requirements (e.g., one requires Next.js while other specifies Vue)
+
+### 5. Severity Assignment
+
+Use this heuristic to prioritize findings:
+
+- **CRITICAL**: Violates constitution MUST, missing core spec artifact, or requirement with zero coverage that blocks baseline functionality
+- **HIGH**: Duplicate or conflicting requirement, ambiguous security/performance attribute, untestable acceptance criterion
+- **MEDIUM**: Terminology drift, missing non-functional task coverage, underspecified edge case
+- **LOW**: Style/wording improvements, minor redundancy not affecting execution order
+
+### 6. Produce Compact Analysis Report
+
+Output a Markdown report (no file writes) with the following structure:
+
+## Specification Analysis Report
+
+| ID | Category | Severity | Location(s) | Summary | Recommendation |
+|----|----------|----------|-------------|---------|----------------|
+| A1 | Duplication | HIGH | spec.md:L120-134 | Two similar requirements ... | Merge phrasing; keep clearer version |
+
+(Add one row per finding; generate stable IDs prefixed by category initial.)
+
+**Coverage Summary Table:**
+
+| Requirement Key | Has Task? | Task IDs | Notes |
+|-----------------|-----------|----------|-------|
+
+**Constitution Alignment Issues:** (if any)
+
+**Unmapped Tasks:** (if any)
+
+**Metrics:**
+
+- Total Requirements
+- Total Tasks
+- Coverage % (requirements with >=1 task)
+- Ambiguity Count
+- Duplication Count
+- Critical Issues Count
+
+### 7. Provide Next Actions
+
+At end of report, output a concise Next Actions block:
+
+- If CRITICAL issues exist: Recommend resolving before `/speckit.implement`
+- If only LOW/MEDIUM: User may proceed, but provide improvement suggestions
+- Provide explicit command suggestions: e.g., "Run /speckit.specify with refinement", "Run /speckit.plan to adjust architecture", "Manually edit tasks.md to add coverage for 'performance-metrics'"
+
+### 8. Offer Remediation
+
+Ask the user: "Would you like me to suggest concrete remediation edits for the top N issues?" (Do NOT apply them automatically.)
+
+## Operating Principles
+
+### Context Efficiency
+
+- **Minimal high-signal tokens**: Focus on actionable findings, not exhaustive documentation
+- **Progressive disclosure**: Load artifacts incrementally; don't dump all content into analysis
+- **Token-efficient output**: Limit findings table to 50 rows; summarize overflow
+- **Deterministic results**: Rerunning without changes should produce consistent IDs and counts
+
+### Analysis Guidelines
+
+- **NEVER modify files** (this is read-only analysis)
+- **NEVER hallucinate missing sections** (if absent, report them accurately)
+- **Prioritize constitution violations** (these are always CRITICAL)
+- **Use examples over exhaustive rules** (cite specific instances, not generic patterns)
+- **Report zero issues gracefully** (emit success report with coverage statistics)
+
+## Context
+
+{{args}}
+"""

.gemini/commands/speckit.checklist.toml

@@ -0,0 +1,298 @@
+description = "Generate a custom checklist for the current feature based on user requirements."
+
+prompt = """
+---
+description: Generate a custom checklist for the current feature based on user requirements.
+---
+
+## Checklist Purpose: "Unit Tests for English"
+
+**CRITICAL CONCEPT**: Checklists are **UNIT TESTS FOR REQUIREMENTS WRITING** - they validate the quality, clarity, and completeness of requirements in a given domain.
+
+**NOT for verification/testing**:
+
+- ❌ NOT "Verify the button clicks correctly"
+- ❌ NOT "Test error handling works"
+- ❌ NOT "Confirm the API returns 200"
+- ❌ NOT checking if code/implementation matches the spec
+
+**FOR requirements quality validation**:
+
+- ✅ "Are visual hierarchy requirements defined for all card types?" (completeness)
+- ✅ "Is 'prominent display' quantified with specific sizing/positioning?" (clarity)
+- ✅ "Are hover state requirements consistent across all interactive elements?" (consistency)
+- ✅ "Are accessibility requirements defined for keyboard navigation?" (coverage)
+- ✅ "Does the spec define what happens when logo image fails to load?" (edge cases)
+
+**Metaphor**: If your spec is code written in English, the checklist is its unit test suite. You're testing whether the requirements are well-written, complete, unambiguous, and ready for implementation - NOT whether the implementation works.
+
+## User Input
+
+```text
+$ARGUMENTS
+```
+
+You **MUST** consider the user input before proceeding (if not empty).
+
+## Execution Steps
+
+1. **Setup**: Run `.specify/scripts/bash/check-prerequisites.sh --json` from repo root and parse JSON for FEATURE_DIR and AVAILABLE_DOCS list.
+   - All file paths must be absolute.
+   - For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\\''m Groot' (or double-quote if possible: "I'm Groot").
+
+2. **Clarify intent (dynamic)**: Derive up to THREE initial contextual clarifying questions (no pre-baked catalog). They MUST:
+   - Be generated from the user's phrasing + extracted signals from spec/plan/tasks
+   - Only ask about information that materially changes checklist content
+   - Be skipped individually if already unambiguous in `$ARGUMENTS`
+   - Prefer precision over breadth
+
+   Generation algorithm:
+   1. Extract signals: feature domain keywords (e.g., auth, latency, UX, API), risk indicators ("critical", "must", "compliance"), stakeholder hints ("QA", "review", "security team"), and explicit deliverables ("a11y", "rollback", "contracts").
+   2. Cluster signals into candidate focus areas (max 4) ranked by relevance.
+   3. Identify probable audience & timing (author, reviewer, QA, release) if not explicit.
+   4. Detect missing dimensions: scope breadth, depth/rigor, risk emphasis, exclusion boundaries, measurable acceptance criteria.
+   5. Formulate questions chosen from these archetypes:
+      - Scope refinement (e.g., "Should this include integration touchpoints with X and Y or stay limited to local module correctness?")
+      - Risk prioritization (e.g., "Which of these potential risk areas should receive mandatory gating checks?")
+      - Depth calibration (e.g., "Is this a lightweight pre-commit sanity list or a formal release gate?")
+      - Audience framing (e.g., "Will this be used by the author only or peers during PR review?")
+      - Boundary exclusion (e.g., "Should we explicitly exclude performance tuning items this round?")
+      - Scenario class gap (e.g., "No recovery flows detected—are rollback / partial failure paths in scope?")
+
+   Question formatting rules:
+   - If presenting options, generate a compact table with columns: Option | Candidate | Why It Matters
+   - Limit to A–E options maximum; omit table if a free-form answer is clearer
+   - Never ask the user to restate what they already said
+   - Avoid speculative categories (no hallucination). If uncertain, ask explicitly: "Confirm whether X belongs in scope."
+
+   Defaults when interaction impossible:
+   - Depth: Standard
+   - Audience: Reviewer (PR) if code-related; Author otherwise
+   - Focus: Top 2 relevance clusters
+
+   Output the questions (label Q1/Q2/Q3). After answers: if ≥2 scenario classes (Alternate / Exception / Recovery / Non-Functional domain) remain unclear, you MAY ask up to TWO more targeted follow‑ups (Q4/Q5) with a one-line justification each (e.g., "Unresolved recovery path risk"). Do not exceed five total questions. Skip escalation if user explicitly declines more.
+
+3. **Understand user request**: Combine `$ARGUMENTS` + clarifying answers:
+   - Derive checklist theme (e.g., security, review, deploy, ux)
+   - Consolidate explicit must-have items mentioned by user
+   - Map focus selections to category scaffolding
+   - Infer any missing context from spec/plan/tasks (do NOT hallucinate)
+
+4. **Load feature context**: Read from FEATURE_DIR:
+   - spec.md: Feature requirements and scope
+   - plan.md (if exists): Technical details, dependencies
+   - tasks.md (if exists): Implementation tasks
+
+   **Context Loading Strategy**:
+   - Load only necessary portions relevant to active focus areas (avoid full-file dumping)
+   - Prefer summarizing long sections into concise scenario/requirement bullets
+   - Use progressive disclosure: add follow-on retrieval only if gaps detected
+   - If source docs are large, generate interim summary items instead of embedding raw text
+
+5. **Generate checklist** - Create "Unit Tests for Requirements":
+   - Create `FEATURE_DIR/checklists/` directory if it doesn't exist
+   - Generate unique checklist filename:
+     - Use short, descriptive name based on domain (e.g., `ux.md`, `api.md`, `security.md`)
+     - Format: `[domain].md`
+     - If file exists, append to existing file
+   - Number items sequentially starting from CHK001
+   - Each `/speckit.checklist` run creates a NEW file (never overwrites existing checklists)
+
+   **CORE PRINCIPLE - Test the Requirements, Not the Implementation**:
+   Every checklist item MUST evaluate the REQUIREMENTS THEMSELVES for:
+   - **Completeness**: Are all necessary requirements present?
+   - **Clarity**: Are requirements unambiguous and specific?
+   - **Consistency**: Do requirements align with each other?
+   - **Measurability**: Can requirements be objectively verified?
+   - **Coverage**: Are all scenarios/edge cases addressed?
+
+   **Category Structure** - Group items by requirement quality dimensions:
+   - **Requirement Completeness** (Are all necessary requirements documented?)
+   - **Requirement Clarity** (Are requirements specific and unambiguous?)
+   - **Requirement Consistency** (Do requirements align without conflicts?)
+   - **Acceptance Criteria Quality** (Are success criteria measurable?)
+   - **Scenario Coverage** (Are all flows/cases addressed?)
+   - **Edge Case Coverage** (Are boundary conditions defined?)
+   - **Non-Functional Requirements** (Performance, Security, Accessibility, etc. - are they specified?)
+   - **Dependencies & Assumptions** (Are they documented and validated?)
+   - **Ambiguities & Conflicts** (What needs clarification?)
+
+   **HOW TO WRITE CHECKLIST ITEMS - "Unit Tests for English"**:
+
+   ❌ **WRONG** (Testing implementation):
+   - "Verify landing page displays 3 episode cards"
+   - "Test hover states work on desktop"
+   - "Confirm logo click navigates home"
+
+   ✅ **CORRECT** (Testing requirements quality):
+   - "Are the exact number and layout of featured episodes specified?" [Completeness]
+   - "Is 'prominent display' quantified with specific sizing/positioning?" [Clarity]
+   - "Are hover state requirements consistent across all interactive elements?" [Consistency]
+   - "Are keyboard navigation requirements defined for all interactive UI?" [Coverage]
+   - "Is the fallback behavior specified when logo image fails to load?" [Edge Cases]
+   - "Are loading states defined for asynchronous episode data?" [Completeness]
+   - "Does the spec define visual hierarchy for competing UI elements?" [Clarity]
+
+   **ITEM STRUCTURE**:
+   Each item should follow this pattern:
+   - Question format asking about requirement quality
+   - Focus on what's WRITTEN (or not written) in the spec/plan
+   - Include quality dimension in brackets [Completeness/Clarity/Consistency/etc.]
+   - Reference spec section `[Spec §X.Y]` when checking existing requirements
+   - Use `[Gap]` marker when checking for missing requirements
+
+   **EXAMPLES BY QUALITY DIMENSION**:
+
+   Completeness:
+   - "Are error handling requirements defined for all API failure modes? [Gap]"
+   - "Are accessibility requirements specified for all interactive elements? [Completeness]"
+   - "Are mobile breakpoint requirements defined for responsive layouts? [Gap]"
+
+   Clarity:
+   - "Is 'fast loading' quantified with specific timing thresholds? [Clarity, Spec §NFR-2]"
+   - "Are 'related episodes' selection criteria explicitly defined? [Clarity, Spec §FR-5]"
+   - "Is 'prominent' defined with measurable visual properties? [Ambiguity, Spec §FR-4]"
+
+   Consistency:
+   - "Do navigation requirements align across all pages? [Consistency, Spec §FR-10]"
+   - "Are card component requirements consistent between landing and detail pages? [Consistency]"
+
+   Coverage:
+   - "Are requirements defined for zero-state scenarios (no episodes)? [Coverage, Edge Case]"
+   - "Are concurrent user interaction scenarios addressed? [Coverage, Gap]"
+   - "Are requirements specified for partial data loading failures? [Coverage, Exception Flow]"
+
+   Measurability:
+   - "Are visual hierarchy requirements measurable/testable? [Acceptance Criteria, Spec §FR-1]"
+   - "Can 'balanced visual weight' be objectively verified? [Measurability, Spec §FR-2]"
+
+   **Scenario Classification & Coverage** (Requirements Quality Focus):
+   - Check if requirements exist for: Primary, Alternate, Exception/Error, Recovery, Non-Functional scenarios
+   - For each scenario class, ask: "Are [scenario type] requirements complete, clear, and consistent?"
+   - If scenario class missing: "Are [scenario type] requirements intentionally excluded or missing? [Gap]"
+   - Include resilience/rollback when state mutation occurs: "Are rollback requirements defined for migration failures? [Gap]"
+
+   **Traceability Requirements**:
+   - MINIMUM: ≥80% of items MUST include at least one traceability reference
+   - Each item should reference: spec section `[Spec §X.Y]`, or use markers: `[Gap]`, `[Ambiguity]`, `[Conflict]`, `[Assumption]`
+   - If no ID system exists: "Is a requirement & acceptance criteria ID scheme established? [Traceability]"
+
+   **Surface & Resolve Issues** (Requirements Quality Problems):
+   Ask questions about the requirements themselves:
+   - Ambiguities: "Is the term 'fast' quantified with specific metrics? [Ambiguity, Spec §NFR-1]"
+   - Conflicts: "Do navigation requirements conflict between §FR-10 and §FR-10a? [Conflict]"
+   - Assumptions: "Is the assumption of 'always available podcast API' validated? [Assumption]"
+   - Dependencies: "Are external podcast API requirements documented? [Dependency, Gap]"
+   - Missing definitions: "Is 'visual hierarchy' defined with measurable criteria? [Gap]"
+
+   **Content Consolidation**:
+   - Soft cap: If raw candidate items > 40, prioritize by risk/impact
+   - Merge near-duplicates checking the same requirement aspect
+   - If >5 low-impact edge cases, create one item: "Are edge cases X, Y, Z addressed in requirements? [Coverage]"
+
+   **🚫 ABSOLUTELY PROHIBITED** - These make it an implementation test, not a requirements test:
+   - ❌ Any item starting with "Verify", "Test", "Confirm", "Check" + implementation behavior
+   - ❌ References to code execution, user actions, system behavior
+   - ❌ "Displays correctly", "works properly", "functions as expected"
+   - ❌ "Click", "navigate", "render", "load", "execute"
+   - ❌ Test cases, test plans, QA procedures
+   - ❌ Implementation details (frameworks, APIs, algorithms)
+
+   **✅ REQUIRED PATTERNS** - These test requirements quality:
+   - ✅ "Are [requirement type] defined/specified/documented for [scenario]?"
+   - ✅ "Is [vague term] quantified/clarified with specific criteria?"
+   - ✅ "Are requirements consistent between [section A] and [section B]?"
+   - ✅ "Can [requirement] be objectively measured/verified?"
+   - ✅ "Are [edge cases/scenarios] addressed in requirements?"
+   - ✅ "Does the spec define [missing aspect]?"
+
+6. **Structure Reference**: Generate the checklist following the canonical template in `.specify/templates/checklist-template.md` for title, meta section, category headings, and ID formatting. If template is unavailable, use: H1 title, purpose/created meta lines, `##` category sections containing `- [ ] CHK### <requirement item>` lines with globally incrementing IDs starting at CHK001.
+
+7. **Report**: Output full path to created checklist, item count, and remind user that each run creates a new file. Summarize:
+   - Focus areas selected
+   - Depth level
+   - Actor/timing
+   - Any explicit user-specified must-have items incorporated
+
+**Important**: Each `/speckit.checklist` command invocation creates a checklist file using short, descriptive names unless file already exists. This allows:
+
+- Multiple checklists of different types (e.g., `ux.md`, `test.md`, `security.md`)
+- Simple, memorable filenames that indicate checklist purpose
+- Easy identification and navigation in the `checklists/` folder
+
+To avoid clutter, use descriptive types and clean up obsolete checklists when done.
+
+## Example Checklist Types & Sample Items
+
+**UX Requirements Quality:** `ux.md`
+
+Sample items (testing the requirements, NOT the implementation):
+
+- "Are visual hierarchy requirements defined with measurable criteria? [Clarity, Spec §FR-1]"
+- "Is the number and positioning of UI elements explicitly specified? [Completeness, Spec §FR-1]"
+- "Are interaction state requirements (hover, focus, active) consistently defined? [Consistency]"
+- "Are accessibility requirements specified for all interactive elements? [Coverage, Gap]"
+- "Is fallback behavior defined when images fail to load? [Edge Case, Gap]"
+- "Can 'prominent display' be objectively measured? [Measurability, Spec §FR-4]"
+
+**API Requirements Quality:** `api.md`
+
+Sample items:
+
+- "Are error response formats specified for all failure scenarios? [Completeness]"
+- "Are rate limiting requirements quantified with specific thresholds? [Clarity]"
+- "Are authentication requirements consistent across all endpoints? [Consistency]"
+- "Are retry/timeout requirements defined for external dependencies? [Coverage, Gap]"
+- "Is versioning strategy documented in requirements? [Gap]"
+
+**Performance Requirements Quality:** `performance.md`
+
+Sample items:
+
+- "Are performance requirements quantified with specific metrics? [Clarity]"
+- "Are performance targets defined for all critical user journeys? [Coverage]"
+- "Are performance requirements under different load conditions specified? [Completeness]"
+- "Can performance requirements be objectively measured? [Measurability]"
+- "Are degradation requirements defined for high-load scenarios? [Edge Case, Gap]"
+
+**Security Requirements Quality:** `security.md`
+
+Sample items:
+
+- "Are authentication requirements specified for all protected resources? [Coverage]"
+- "Are data protection requirements defined for sensitive information? [Completeness]"
+- "Is the threat model documented and requirements aligned to it? [Traceability]"
+- "Are security requirements consistent with compliance obligations? [Consistency]"
+- "Are security failure/breach response requirements defined? [Gap, Exception Flow]"
+
+## Anti-Examples: What NOT To Do
+
+**❌ WRONG - These test implementation, not requirements:**
+
+```markdown
+- [ ] CHK001 - Verify landing page displays 3 episode cards [Spec §FR-001]
+- [ ] CHK002 - Test hover states work correctly on desktop [Spec §FR-003]
+- [ ] CHK003 - Confirm logo click navigates to home page [Spec §FR-010]
+- [ ] CHK004 - Check that related episodes section shows 3-5 items [Spec §FR-005]
+```
+
+**✅ CORRECT - These test requirements quality:**
+
+```markdown
+- [ ] CHK001 - Are the number and layout of featured episodes explicitly specified? [Completeness, Spec §FR-001]
+- [ ] CHK002 - Are hover state requirements consistently defined for all interactive elements? [Consistency, Spec §FR-003]
+- [ ] CHK003 - Are navigation requirements clear for all clickable brand elements? [Clarity, Spec §FR-010]
+- [ ] CHK004 - Is the selection criteria for related episodes documented? [Gap, Spec §FR-005]
+- [ ] CHK005 - Are loading state requirements defined for asynchronous episode data? [Gap]
+- [ ] CHK006 - Can "visual hierarchy" requirements be objectively measured? [Measurability, Spec §FR-001]
+```
+
+**Key Differences:**
+
+- Wrong: Tests if the system works correctly
+- Correct: Tests if the requirements are written correctly
+- Wrong: Verification of behavior
+- Correct: Validation of requirement quality
+- Wrong: "Does it do X?"
+- Correct: "Is X clearly specified?"
+"""

.gemini/commands/speckit.clarify.toml

@@ -0,0 +1,185 @@
+description = "Identify underspecified areas in the current feature spec by asking up to 5 highly targeted clarification questions and encoding answers back into the spec."
+
+prompt = """
+---
+description: Identify underspecified areas in the current feature spec by asking up to 5 highly targeted clarification questions and encoding answers back into the spec.
+handoffs: 
+  - label: Build Technical Plan
+    agent: speckit.plan
+    prompt: Create a plan for the spec. I am building with...
+---
+
+## User Input
+
+```text
+$ARGUMENTS
+```
+
+You **MUST** consider the user input before proceeding (if not empty).
+
+## Outline
+
+Goal: Detect and reduce ambiguity or missing decision points in the active feature specification and record the clarifications directly in the spec file.
+
+Note: This clarification workflow is expected to run (and be completed) BEFORE invoking `/speckit.plan`. If the user explicitly states they are skipping clarification (e.g., exploratory spike), you may proceed, but must warn that downstream rework risk increases.
+
+Execution steps:
+
+1. Run `.specify/scripts/bash/check-prerequisites.sh --json --paths-only` from repo root **once** (combined `--json --paths-only` mode / `-Json -PathsOnly`). Parse minimal JSON payload fields:
+   - `FEATURE_DIR`
+   - `FEATURE_SPEC`
+   - (Optionally capture `IMPL_PLAN`, `TASKS` for future chained flows.)
+   - If JSON parsing fails, abort and instruct user to re-run `/speckit.specify` or verify feature branch environment.
+   - For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\\''m Groot' (or double-quote if possible: "I'm Groot").
+
+2. Load the current spec file. Perform a structured ambiguity & coverage scan using this taxonomy. For each category, mark status: Clear / Partial / Missing. Produce an internal coverage map used for prioritization (do not output raw map unless no questions will be asked).
+
+   Functional Scope & Behavior:
+   - Core user goals & success criteria
+   - Explicit out-of-scope declarations
+   - User roles / personas differentiation
+
+   Domain & Data Model:
+   - Entities, attributes, relationships
+   - Identity & uniqueness rules
+   - Lifecycle/state transitions
+   - Data volume / scale assumptions
+
+   Interaction & UX Flow:
+   - Critical user journeys / sequences
+   - Error/empty/loading states
+   - Accessibility or localization notes
+
+   Non-Functional Quality Attributes:
+   - Performance (latency, throughput targets)
+   - Scalability (horizontal/vertical, limits)
+   - Reliability & availability (uptime, recovery expectations)
+   - Observability (logging, metrics, tracing signals)
+   - Security & privacy (authN/Z, data protection, threat assumptions)
+   - Compliance / regulatory constraints (if any)
+
+   Integration & External Dependencies:
+   - External services/APIs and failure modes
+   - Data import/export formats
+   - Protocol/versioning assumptions
+
+   Edge Cases & Failure Handling:
+   - Negative scenarios
+   - Rate limiting / throttling
+   - Conflict resolution (e.g., concurrent edits)
+
+   Constraints & Tradeoffs:
+   - Technical constraints (language, storage, hosting)
+   - Explicit tradeoffs or rejected alternatives
+
+   Terminology & Consistency:
+   - Canonical glossary terms
+   - Avoided synonyms / deprecated terms
+
+   Completion Signals:
+   - Acceptance criteria testability
+   - Measurable Definition of Done style indicators
+
+   Misc / Placeholders:
+   - TODO markers / unresolved decisions
+   - Ambiguous adjectives ("robust", "intuitive") lacking quantification
+
+   For each category with Partial or Missing status, add a candidate question opportunity unless:
+   - Clarification would not materially change implementation or validation strategy
+   - Information is better deferred to planning phase (note internally)
+
+3. Generate (internally) a prioritized queue of candidate clarification questions (maximum 5). Do NOT output them all at once. Apply these constraints:
+    - Maximum of 10 total questions across the whole session.
+    - Each question must be answerable with EITHER:
+       - A short multiple‑choice selection (2–5 distinct, mutually exclusive options), OR
+       - A one-word / short‑phrase answer (explicitly constrain: "Answer in <=5 words").
+    - Only include questions whose answers materially impact architecture, data modeling, task decomposition, test design, UX behavior, operational readiness, or compliance validation.
+    - Ensure category coverage balance: attempt to cover the highest impact unresolved categories first; avoid asking two low-impact questions when a single high-impact area (e.g., security posture) is unresolved.
+    - Exclude questions already answered, trivial stylistic preferences, or plan-level execution details (unless blocking correctness).
+    - Favor clarifications that reduce downstream rework risk or prevent misaligned acceptance tests.
+    - If more than 5 categories remain unresolved, select the top 5 by (Impact * Uncertainty) heuristic.
+
+4. Sequential questioning loop (interactive):
+    - Present EXACTLY ONE question at a time.
+    - For multiple‑choice questions:
+       - **Analyze all options** and determine the **most suitable option** based on:
+          - Best practices for the project type
+          - Common patterns in similar implementations
+          - Risk reduction (security, performance, maintainability)
+          - Alignment with any explicit project goals or constraints visible in the spec
+       - Present your **recommended option prominently** at the top with clear reasoning (1-2 sentences explaining why this is the best choice).
+       - Format as: `**Recommended:** Option [X] - <reasoning>`
+       - Then render all options as a Markdown table:
+
+       | Option | Description |
+       |--------|-------------|
+       | A | <Option A description> |
+       | B | <Option B description> |
+       | C | <Option C description> (add D/E as needed up to 5) |
+       | Short | Provide a different short answer (<=5 words) (Include only if free-form alternative is appropriate) |
+
+       - After the table, add: `You can reply with the option letter (e.g., "A"), accept the recommendation by saying "yes" or "recommended", or provide your own short answer.`
+    - For short‑answer style (no meaningful discrete options):
+       - Provide your **suggested answer** based on best practices and context.
+       - Format as: `**Suggested:** <your proposed answer> - <brief reasoning>`
+       - Then output: `Format: Short answer (<=5 words). You can accept the suggestion by saying "yes" or "suggested", or provide your own answer.`
+    - After the user answers:
+       - If the user replies with "yes", "recommended", or "suggested", use your previously stated recommendation/suggestion as the answer.
+       - Otherwise, validate the answer maps to one option or fits the <=5 word constraint.
+       - If ambiguous, ask for a quick disambiguation (count still belongs to same question; do not advance).
+       - Once satisfactory, record it in working memory (do not yet write to disk) and move to the next queued question.
+    - Stop asking further questions when:
+       - All critical ambiguities resolved early (remaining queued items become unnecessary), OR
+       - User signals completion ("done", "good", "no more"), OR
+       - You reach 5 asked questions.
+    - Never reveal future queued questions in advance.
+    - If no valid questions exist at start, immediately report no critical ambiguities.
+
+5. Integration after EACH accepted answer (incremental update approach):
+    - Maintain in-memory representation of the spec (loaded once at start) plus the raw file contents.
+    - For the first integrated answer in this session:
+       - Ensure a `## Clarifications` section exists (create it just after the highest-level contextual/overview section per the spec template if missing).
+       - Under it, create (if not present) a `### Session YYYY-MM-DD` subheading for today.
+    - Append a bullet line immediately after acceptance: `- Q: <question> → A: <final answer>`.
+    - Then immediately apply the clarification to the most appropriate section(s):
+       - Functional ambiguity → Update or add a bullet in Functional Requirements.
+       - User interaction / actor distinction → Update User Stories or Actors subsection (if present) with clarified role, constraint, or scenario.
+       - Data shape / entities → Update Data Model (add fields, types, relationships) preserving ordering; note added constraints succinctly.
+       - Non-functional constraint → Add/modify measurable criteria in Non-Functional / Quality Attributes section (convert vague adjective to metric or explicit target).
+       - Edge case / negative flow → Add a new bullet under Edge Cases / Error Handling (or create such subsection if template provides placeholder for it).
+       - Terminology conflict → Normalize term across spec; retain original only if necessary by adding `(formerly referred to as "X")` once.
+    - If the clarification invalidates an earlier ambiguous statement, replace that statement instead of duplicating; leave no obsolete contradictory text.
+    - Save the spec file AFTER each integration to minimize risk of context loss (atomic overwrite).
+    - Preserve formatting: do not reorder unrelated sections; keep heading hierarchy intact.
+    - Keep each inserted clarification minimal and testable (avoid narrative drift).
+
+6. Validation (performed after EACH write plus final pass):
+   - Clarifications session contains exactly one bullet per accepted answer (no duplicates).
+   - Total asked (accepted) questions ≤ 5.
+   - Updated sections contain no lingering vague placeholders the new answer was meant to resolve.
+   - No contradictory earlier statement remains (scan for now-invalid alternative choices removed).
+   - Markdown structure valid; only allowed new headings: `## Clarifications`, `### Session YYYY-MM-DD`.
+   - Terminology consistency: same canonical term used across all updated sections.
+
+7. Write the updated spec back to `FEATURE_SPEC`.
+
+8. Report completion (after questioning loop ends or early termination):
+   - Number of questions asked & answered.
+   - Path to updated spec.
+   - Sections touched (list names).
+   - Coverage summary table listing each taxonomy category with Status: Resolved (was Partial/Missing and addressed), Deferred (exceeds question quota or better suited for planning), Clear (already sufficient), Outstanding (still Partial/Missing but low impact).
+   - If any Outstanding or Deferred remain, recommend whether to proceed to `/speckit.plan` or run `/speckit.clarify` again later post-plan.
+   - Suggested next command.
+
+Behavior rules:
+
+- If no meaningful ambiguities found (or all potential questions would be low-impact), respond: "No critical ambiguities detected worth formal clarification." and suggest proceeding.
+- If spec file missing, instruct user to run `/speckit.specify` first (do not create a new spec here).
+- Never exceed 5 total asked questions (clarification retries for a single question do not count as new questions).
+- Avoid speculative tech stack questions unless the absence blocks functional clarity.
+- Respect user early termination signals ("stop", "done", "proceed").
+- If no questions asked due to full coverage, output a compact coverage summary (all categories Clear) then suggest advancing.
+- If quota reached with unresolved high-impact categories remaining, explicitly flag them under Deferred with rationale.
+
+Context for prioritization: {{args}}
+"""

.gemini/commands/speckit.constitution.toml

@@ -0,0 +1,86 @@
+description = "Create or update the project constitution from interactive or provided principle inputs, ensuring all dependent templates stay in sync."
+
+prompt = """
+---
+description: Create or update the project constitution from interactive or provided principle inputs, ensuring all dependent templates stay in sync.
+handoffs: 
+  - label: Build Specification
+    agent: speckit.specify
+    prompt: Implement the feature specification based on the updated constitution. I want to build...
+---
+
+## User Input
+
+```text
+$ARGUMENTS
+```
+
+You **MUST** consider the user input before proceeding (if not empty).
+
+## Outline
+
+You are updating the project constitution at `.specify/memory/constitution.md`. This file is a TEMPLATE containing placeholder tokens in square brackets (e.g. `[PROJECT_NAME]`, `[PRINCIPLE_1_NAME]`). Your job is to (a) collect/derive concrete values, (b) fill the template precisely, and (c) propagate any amendments across dependent artifacts.
+
+Follow this execution flow:
+
+1. Load the existing constitution template at `.specify/memory/constitution.md`.
+   - Identify every placeholder token of the form `[ALL_CAPS_IDENTIFIER]`.
+   **IMPORTANT**: The user might require less or more principles than the ones used in the template. If a number is specified, respect that - follow the general template. You will update the doc accordingly.
+
+2. Collect/derive values for placeholders:
+   - If user input (conversation) supplies a value, use it.
+   - Otherwise infer from existing repo context (README, docs, prior constitution versions if embedded).
+   - For governance dates: `RATIFICATION_DATE` is the original adoption date (if unknown ask or mark TODO), `LAST_AMENDED_DATE` is today if changes are made, otherwise keep previous.
+   - `CONSTITUTION_VERSION` must increment according to semantic versioning rules:
+     - MAJOR: Backward incompatible governance/principle removals or redefinitions.
+     - MINOR: New principle/section added or materially expanded guidance.
+     - PATCH: Clarifications, wording, typo fixes, non-semantic refinements.
+   - If version bump type ambiguous, propose reasoning before finalizing.
+
+3. Draft the updated constitution content:
+   - Replace every placeholder with concrete text (no bracketed tokens left except intentionally retained template slots that the project has chosen not to define yet—explicitly justify any left).
+   - Preserve heading hierarchy and comments can be removed once replaced unless they still add clarifying guidance.
+   - Ensure each Principle section: succinct name line, paragraph (or bullet list) capturing non‑negotiable rules, explicit rationale if not obvious.
+   - Ensure Governance section lists amendment procedure, versioning policy, and compliance review expectations.
+
+4. Consistency propagation checklist (convert prior checklist into active validations):
+   - Read `.specify/templates/plan-template.md` and ensure any "Constitution Check" or rules align with updated principles.
+   - Read `.specify/templates/spec-template.md` for scope/requirements alignment—update if constitution adds/removes mandatory sections or constraints.
+   - Read `.specify/templates/tasks-template.md` and ensure task categorization reflects new or removed principle-driven task types (e.g., observability, versioning, testing discipline).
+   - Read each command file in `.specify/templates/commands/*.md` (including this one) to verify no outdated references (agent-specific names like CLAUDE only) remain when generic guidance is required.
+   - Read any runtime guidance docs (e.g., `README.md`, `docs/quickstart.md`, or agent-specific guidance files if present). Update references to principles changed.
+
+5. Produce a Sync Impact Report (prepend as an HTML comment at top of the constitution file after update):
+   - Version change: old → new
+   - List of modified principles (old title → new title if renamed)
+   - Added sections
+   - Removed sections
+   - Templates requiring updates (✅ updated / ⚠ pending) with file paths
+   - Follow-up TODOs if any placeholders intentionally deferred.
+
+6. Validation before final output:
+   - No remaining unexplained bracket tokens.
+   - Version line matches report.
+   - Dates ISO format YYYY-MM-DD.
+   - Principles are declarative, testable, and free of vague language ("should" → replace with MUST/SHOULD rationale where appropriate).
+
+7. Write the completed constitution back to `.specify/memory/constitution.md` (overwrite).
+
+8. Output a final summary to the user with:
+   - New version and bump rationale.
+   - Any files flagged for manual follow-up.
+   - Suggested commit message (e.g., `docs: amend constitution to vX.Y.Z (principle additions + governance update)`).
+
+Formatting & Style Requirements:
+
+- Use Markdown headings exactly as in the template (do not demote/promote levels).
+- Wrap long rationale lines to keep readability (<100 chars ideally) but do not hard enforce with awkward breaks.
+- Keep a single blank line between sections.
+- Avoid trailing whitespace.
+
+If the user supplies partial updates (e.g., only one principle revision), still perform validation and version decision steps.
+
+If critical info missing (e.g., ratification date truly unknown), insert `TODO(<FIELD_NAME>): explanation` and include in the Sync Impact Report under deferred items.
+
+Do not create a new template; always operate on the existing `.specify/memory/constitution.md` file.
+"""

.gemini/commands/speckit.implement.toml

@@ -0,0 +1,139 @@
+description = "Execute the implementation plan by processing and executing all tasks defined in tasks.md"
+
+prompt = """
+---
+description: Execute the implementation plan by processing and executing all tasks defined in tasks.md
+---
+
+## User Input
+
+```text
+$ARGUMENTS
+```
+
+You **MUST** consider the user input before proceeding (if not empty).
+
+## Outline
+
+1. Run `.specify/scripts/bash/check-prerequisites.sh --json --require-tasks --include-tasks` from repo root and parse FEATURE_DIR and AVAILABLE_DOCS list. All paths must be absolute. For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\\''m Groot' (or double-quote if possible: "I'm Groot").
+
+2. **Check checklists status** (if FEATURE_DIR/checklists/ exists):
+   - Scan all checklist files in the checklists/ directory
+   - For each checklist, count:
+     - Total items: All lines matching `- [ ]` or `- [X]` or `- [x]`
+     - Completed items: Lines matching `- [X]` or `- [x]`
+     - Incomplete items: Lines matching `- [ ]`
+   - Create a status table:
+
+     ```text
+     | Checklist | Total | Completed | Incomplete | Status |
+     |-----------|-------|-----------|------------|--------|
+     | ux.md     | 12    | 12        | 0          | ✓ PASS |
+     | test.md   | 8     | 5         | 3          | ✗ FAIL |
+     | security.md | 6   | 6         | 0          | ✓ PASS |
+     ```
+
+   - Calculate overall status:
+     - **PASS**: All checklists have 0 incomplete items
+     - **FAIL**: One or more checklists have incomplete items
+
+   - **If any checklist is incomplete**:
+     - Display the table with incomplete item counts
+     - **STOP** and ask: "Some checklists are incomplete. Do you want to proceed with implementation anyway? (yes/no)"
+     - Wait for user response before continuing
+     - If user says "no" or "wait" or "stop", halt execution
+     - If user says "yes" or "proceed" or "continue", proceed to step 3
+
+   - **If all checklists are complete**:
+     - Display the table showing all checklists passed
+     - Automatically proceed to step 3
+
+3. Load and analyze the implementation context:
+   - **REQUIRED**: Read tasks.md for the complete task list and execution plan
+   - **REQUIRED**: Read plan.md for tech stack, architecture, and file structure
+   - **IF EXISTS**: Read data-model.md for entities and relationships
+   - **IF EXISTS**: Read contracts/ for API specifications and test requirements
+   - **IF EXISTS**: Read research.md for technical decisions and constraints
+   - **IF EXISTS**: Read quickstart.md for integration scenarios
+
+4. **Project Setup Verification**:
+   - **REQUIRED**: Create/verify ignore files based on actual project setup:
+
+   **Detection & Creation Logic**:
+   - Check if the following command succeeds to determine if the repository is a git repo (create/verify .gitignore if so):
+
+     ```sh
+     git rev-parse --git-dir 2>/dev/null
+     ```
+
+   - Check if Dockerfile* exists or Docker in plan.md → create/verify .dockerignore
+   - Check if .eslintrc* exists → create/verify .eslintignore
+   - Check if eslint.config.* exists → ensure the config's `ignores` entries cover required patterns
+   - Check if .prettierrc* exists → create/verify .prettierignore
+   - Check if .npmrc or package.json exists → create/verify .npmignore (if publishing)
+   - Check if terraform files (*.tf) exist → create/verify .terraformignore
+   - Check if .helmignore needed (helm charts present) → create/verify .helmignore
+
+   **If ignore file already exists**: Verify it contains essential patterns, append missing critical patterns only
+   **If ignore file missing**: Create with full pattern set for detected technology
+
+   **Common Patterns by Technology** (from plan.md tech stack):
+   - **Node.js/JavaScript/TypeScript**: `node_modules/`, `dist/`, `build/`, `*.log`, `.env*`
+   - **Python**: `__pycache__/`, `*.pyc`, `.venv/`, `venv/`, `dist/`, `*.egg-info/`
+   - **Java**: `target/`, `*.class`, `*.jar`, `.gradle/`, `build/`
+   - **C#/.NET**: `bin/`, `obj/`, `*.user`, `*.suo`, `packages/`
+   - **Go**: `*.exe`, `*.test`, `vendor/`, `*.out`
+   - **Ruby**: `.bundle/`, `log/`, `tmp/`, `*.gem`, `vendor/bundle/`
+   - **PHP**: `vendor/`, `*.log`, `*.cache`, `*.env`
+   - **Rust**: `target/`, `debug/`, `release/`, `*.rs.bk`, `*.rlib`, `*.prof*`, `.idea/`, `*.log`, `.env*`
+   - **Kotlin**: `build/`, `out/`, `.gradle/`, `.idea/`, `*.class`, `*.jar`, `*.iml`, `*.log`, `.env*`
+   - **C++**: `build/`, `bin/`, `obj/`, `out/`, `*.o`, `*.so`, `*.a`, `*.exe`, `*.dll`, `.idea/`, `*.log`, `.env*`
+   - **C**: `build/`, `bin/`, `obj/`, `out/`, `*.o`, `*.a`, `*.so`, `*.exe`, `Makefile`, `config.log`, `.idea/`, `*.log`, `.env*`
+   - **Swift**: `.build/`, `DerivedData/`, `*.swiftpm/`, `Packages/`
+   - **R**: `.Rproj.user/`, `.Rhistory`, `.RData`, `.Ruserdata`, `*.Rproj`, `packrat/`, `renv/`
+   - **Universal**: `.DS_Store`, `Thumbs.db`, `*.tmp`, `*.swp`, `.vscode/`, `.idea/`
+
+   **Tool-Specific Patterns**:
+   - **Docker**: `node_modules/`, `.git/`, `Dockerfile*`, `.dockerignore`, `*.log*`, `.env*`, `coverage/`
+   - **ESLint**: `node_modules/`, `dist/`, `build/`, `coverage/`, `*.min.js`
+   - **Prettier**: `node_modules/`, `dist/`, `build/`, `coverage/`, `package-lock.json`, `yarn.lock`, `pnpm-lock.yaml`
+   - **Terraform**: `.terraform/`, `*.tfstate*`, `*.tfvars`, `.terraform.lock.hcl`
+   - **Kubernetes/k8s**: `*.secret.yaml`, `secrets/`, `.kube/`, `kubeconfig*`, `*.key`, `*.crt`
+
+5. Parse tasks.md structure and extract:
+   - **Task phases**: Setup, Tests, Core, Integration, Polish
+   - **Task dependencies**: Sequential vs parallel execution rules
+   - **Task details**: ID, description, file paths, parallel markers [P]
+   - **Execution flow**: Order and dependency requirements
+
+6. Execute implementation following the task plan:
+   - **Phase-by-phase execution**: Complete each phase before moving to the next
+   - **Respect dependencies**: Run sequential tasks in order, parallel tasks [P] can run together  
+   - **Follow TDD approach**: Execute test tasks before their corresponding implementation tasks
+   - **File-based coordination**: Tasks affecting the same files must run sequentially
+   - **Validation checkpoints**: Verify each phase completion before proceeding
+
+7. Implementation execution rules:
+   - **Setup first**: Initialize project structure, dependencies, configuration
+   - **Tests before code**: If you need to write tests for contracts, entities, and integration scenarios
+   - **Core development**: Implement models, services, CLI commands, endpoints
+   - **Integration work**: Database connections, middleware, logging, external services
+   - **Polish and validation**: Unit tests, performance optimization, documentation
+
+8. Progress tracking and error handling:
+   - Report progress after each completed task
+   - Halt execution if any non-parallel task fails
+   - For parallel tasks [P], continue with successful tasks, report failed ones
+   - Provide clear error messages with context for debugging
+   - Suggest next steps if implementation cannot proceed
+   - **IMPORTANT** For completed tasks, make sure to mark the task off as [X] in the tasks file.
+
+9. Completion validation:
+   - Verify all required tasks are completed
+   - Check that implemented features match the original specification
+   - Validate that tests pass and coverage meets requirements
+   - Confirm the implementation follows the technical plan
+   - Report final status with summary of completed work
+
+Note: This command assumes a complete task breakdown exists in tasks.md. If tasks are incomplete or missing, suggest running `/speckit.tasks` first to regenerate the task list.
+"""

.gemini/commands/speckit.plan.toml

@@ -0,0 +1,93 @@
+description = "Execute the implementation planning workflow using the plan template to generate design artifacts."
+
+prompt = """
+---
+description: Execute the implementation planning workflow using the plan template to generate design artifacts.
+handoffs: 
+  - label: Create Tasks
+    agent: speckit.tasks
+    prompt: Break the plan into tasks
+    send: true
+  - label: Create Checklist
+    agent: speckit.checklist
+    prompt: Create a checklist for the following domain...
+---
+
+## User Input
+
+```text
+$ARGUMENTS
+```
+
+You **MUST** consider the user input before proceeding (if not empty).
+
+## Outline
+
+1. **Setup**: Run `.specify/scripts/bash/setup-plan.sh --json` from repo root and parse JSON for FEATURE_SPEC, IMPL_PLAN, SPECS_DIR, BRANCH. For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\\''m Groot' (or double-quote if possible: "I'm Groot").
+
+2. **Load context**: Read FEATURE_SPEC and `.specify/memory/constitution.md`. Load IMPL_PLAN template (already copied).
+
+3. **Execute plan workflow**: Follow the structure in IMPL_PLAN template to:
+   - Fill Technical Context (mark unknowns as "NEEDS CLARIFICATION")
+   - Fill Constitution Check section from constitution
+   - Evaluate gates (ERROR if violations unjustified)
+   - Phase 0: Generate research.md (resolve all NEEDS CLARIFICATION)
+   - Phase 1: Generate data-model.md, contracts/, quickstart.md
+   - Phase 1: Update agent context by running the agent script
+   - Re-evaluate Constitution Check post-design
+
+4. **Stop and report**: Command ends after Phase 2 planning. Report branch, IMPL_PLAN path, and generated artifacts.
+
+## Phases
+
+### Phase 0: Outline & Research
+
+1. **Extract unknowns from Technical Context** above:
+   - For each NEEDS CLARIFICATION → research task
+   - For each dependency → best practices task
+   - For each integration → patterns task
+
+2. **Generate and dispatch research agents**:
+
+   ```text
+   For each unknown in Technical Context:
+     Task: "Research {unknown} for {feature context}"
+   For each technology choice:
+     Task: "Find best practices for {tech} in {domain}"
+   ```
+
+3. **Consolidate findings** in `research.md` using format:
+   - Decision: [what was chosen]
+   - Rationale: [why chosen]
+   - Alternatives considered: [what else evaluated]
+
+**Output**: research.md with all NEEDS CLARIFICATION resolved
+
+### Phase 1: Design & Contracts
+
+**Prerequisites:** `research.md` complete
+
+1. **Extract entities from feature spec** → `data-model.md`:
+   - Entity name, fields, relationships
+   - Validation rules from requirements
+   - State transitions if applicable
+
+2. **Generate API contracts** from functional requirements:
+   - For each user action → endpoint
+   - Use standard REST/GraphQL patterns
+   - Output OpenAPI/GraphQL schema to `/contracts/`
+
+3. **Agent context update**:
+   - Run `.specify/scripts/bash/update-agent-context.sh gemini`
+   - These scripts detect which AI agent is in use
+   - Update the appropriate agent-specific context file
+   - Add only new technology from current plan
+   - Preserve manual additions between markers
+
+**Output**: data-model.md, /contracts/*, quickstart.md, agent-specific file
+
+## Key rules
+
+- Use absolute paths
+- ERROR on gate failures or unresolved clarifications
+"""

.gemini/commands/speckit.specify.toml

@@ -0,0 +1,261 @@
+description = "Create or update the feature specification from a natural language feature description."
+
+prompt = """
+---
+description: Create or update the feature specification from a natural language feature description.
+handoffs: 
+  - label: Build Technical Plan
+    agent: speckit.plan
+    prompt: Create a plan for the spec. I am building with...
+  - label: Clarify Spec Requirements
+    agent: speckit.clarify
+    prompt: Clarify specification requirements
+    send: true
+---
+
+## User Input
+
+```text
+$ARGUMENTS
+```
+
+You **MUST** consider the user input before proceeding (if not empty).
+
+## Outline
+
+The text the user typed after `/speckit.specify` in the triggering message **is** the feature description. Assume you always have it available in this conversation even if `{{args}}` appears literally below. Do not ask the user to repeat it unless they provided an empty command.
+
+Given that feature description, do this:
+
+1. **Generate a concise short name** (2-4 words) for the branch:
+   - Analyze the feature description and extract the most meaningful keywords
+   - Create a 2-4 word short name that captures the essence of the feature
+   - Use action-noun format when possible (e.g., "add-user-auth", "fix-payment-bug")
+   - Preserve technical terms and acronyms (OAuth2, API, JWT, etc.)
+   - Keep it concise but descriptive enough to understand the feature at a glance
+   - Examples:
+     - "I want to add user authentication" → "user-auth"
+     - "Implement OAuth2 integration for the API" → "oauth2-api-integration"
+     - "Create a dashboard for analytics" → "analytics-dashboard"
+     - "Fix payment processing timeout bug" → "fix-payment-timeout"
+
+2. **Check for existing branches before creating new one**:
+   
+   a. First, fetch all remote branches to ensure we have the latest information:
+      ```bash
+      git fetch --all --prune
+      ```
+   
+   b. Find the highest feature number across all sources for the short-name:
+      - Remote branches: `git ls-remote --heads origin | grep -E 'refs/heads/[0-9]+-<short-name>$'`
+      - Local branches: `git branch | grep -E '^[* ]*[0-9]+-<short-name>$'`
+      - Specs directories: Check for directories matching `specs/[0-9]+-<short-name>`
+   
+   c. Determine the next available number:
+      - Extract all numbers from all three sources
+      - Find the highest number N
+      - Use N+1 for the new branch number
+   
+   d. Run the script `.specify/scripts/bash/create-new-feature.sh --json "{{args}}"` with the calculated number and short-name:
+      - Pass `--number N+1` and `--short-name "your-short-name"` along with the feature description
+      - Bash example: `.specify/scripts/bash/create-new-feature.sh --json "{{args}}" --json --number 5 --short-name "user-auth" "Add user authentication"`
+      - PowerShell example: `.specify/scripts/bash/create-new-feature.sh --json "{{args}}" -Json -Number 5 -ShortName "user-auth" "Add user authentication"`
+   
+   **IMPORTANT**:
+   - Check all three sources (remote branches, local branches, specs directories) to find the highest number
+   - Only match branches/directories with the exact short-name pattern
+   - If no existing branches/directories found with this short-name, start with number 1
+   - You must only ever run this script once per feature
+   - The JSON is provided in the terminal as output - always refer to it to get the actual content you're looking for
+   - The JSON output will contain BRANCH_NAME and SPEC_FILE paths
+   - For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\\''m Groot' (or double-quote if possible: "I'm Groot")
+
+3. Load `.specify/templates/spec-template.md` to understand required sections.
+
+4. Follow this execution flow:
+
+    1. Parse user description from Input
+       If empty: ERROR "No feature description provided"
+    2. Extract key concepts from description
+       Identify: actors, actions, data, constraints
+    3. For unclear aspects:
+       - Make informed guesses based on context and industry standards
+       - Only mark with [NEEDS CLARIFICATION: specific question] if:
+         - The choice significantly impacts feature scope or user experience
+         - Multiple reasonable interpretations exist with different implications
+         - No reasonable default exists
+       - **LIMIT: Maximum 3 [NEEDS CLARIFICATION] markers total**
+       - Prioritize clarifications by impact: scope > security/privacy > user experience > technical details
+    4. Fill User Scenarios & Testing section
+       If no clear user flow: ERROR "Cannot determine user scenarios"
+    5. Generate Functional Requirements
+       Each requirement must be testable
+       Use reasonable defaults for unspecified details (document assumptions in Assumptions section)
+    6. Define Success Criteria
+       Create measurable, technology-agnostic outcomes
+       Include both quantitative metrics (time, performance, volume) and qualitative measures (user satisfaction, task completion)
+       Each criterion must be verifiable without implementation details
+    7. Identify Key Entities (if data involved)
+    8. Return: SUCCESS (spec ready for planning)
+
+5. Write the specification to SPEC_FILE using the template structure, replacing placeholders with concrete details derived from the feature description (arguments) while preserving section order and headings.
+
+6. **Specification Quality Validation**: After writing the initial spec, validate it against quality criteria:
+
+   a. **Create Spec Quality Checklist**: Generate a checklist file at `FEATURE_DIR/checklists/requirements.md` using the checklist template structure with these validation items:
+
+      ```markdown
+      # Specification Quality Checklist: [FEATURE NAME]
+      
+      **Purpose**: Validate specification completeness and quality before proceeding to planning
+      **Created**: [DATE]
+      **Feature**: [Link to spec.md]
+      
+      ## Content Quality
+      
+      - [ ] No implementation details (languages, frameworks, APIs)
+      - [ ] Focused on user value and business needs
+      - [ ] Written for non-technical stakeholders
+      - [ ] All mandatory sections completed
+      
+      ## Requirement Completeness
+      
+      - [ ] No [NEEDS CLARIFICATION] markers remain
+      - [ ] Requirements are testable and unambiguous
+      - [ ] Success criteria are measurable
+      - [ ] Success criteria are technology-agnostic (no implementation details)
+      - [ ] All acceptance scenarios are defined
+      - [ ] Edge cases are identified
+      - [ ] Scope is clearly bounded
+      - [ ] Dependencies and assumptions identified
+      
+      ## Feature Readiness
+      
+      - [ ] All functional requirements have clear acceptance criteria
+      - [ ] User scenarios cover primary flows
+      - [ ] Feature meets measurable outcomes defined in Success Criteria
+      - [ ] No implementation details leak into specification
+      
+      ## Notes
+      
+      - Items marked incomplete require spec updates before `/speckit.clarify` or `/speckit.plan`
+      ```
+
+   b. **Run Validation Check**: Review the spec against each checklist item:
+      - For each item, determine if it passes or fails
+      - Document specific issues found (quote relevant spec sections)
+
+   c. **Handle Validation Results**:
+
+      - **If all items pass**: Mark checklist complete and proceed to step 6
+
+      - **If items fail (excluding [NEEDS CLARIFICATION])**:
+        1. List the failing items and specific issues
+        2. Update the spec to address each issue
+        3. Re-run validation until all items pass (max 3 iterations)
+        4. If still failing after 3 iterations, document remaining issues in checklist notes and warn user
+
+      - **If [NEEDS CLARIFICATION] markers remain**:
+        1. Extract all [NEEDS CLARIFICATION: ...] markers from the spec
+        2. **LIMIT CHECK**: If more than 3 markers exist, keep only the 3 most critical (by scope/security/UX impact) and make informed guesses for the rest
+        3. For each clarification needed (max 3), present options to user in this format:
+
+           ```markdown
+           ## Question [N]: [Topic]
+           
+           **Context**: [Quote relevant spec section]
+           
+           **What we need to know**: [Specific question from NEEDS CLARIFICATION marker]
+           
+           **Suggested Answers**:
+           
+           | Option | Answer | Implications |
+           |--------|--------|--------------|
+           | A      | [First suggested answer] | [What this means for the feature] |
+           | B      | [Second suggested answer] | [What this means for the feature] |
+           | C      | [Third suggested answer] | [What this means for the feature] |
+           | Custom | Provide your own answer | [Explain how to provide custom input] |
+           
+           **Your choice**: _[Wait for user response]_
+           ```
+
+        4. **CRITICAL - Table Formatting**: Ensure markdown tables are properly formatted:
+           - Use consistent spacing with pipes aligned
+           - Each cell should have spaces around content: `| Content |` not `|Content|`
+           - Header separator must have at least 3 dashes: `|--------|`
+           - Test that the table renders correctly in markdown preview
+        5. Number questions sequentially (Q1, Q2, Q3 - max 3 total)
+        6. Present all questions together before waiting for responses
+        7. Wait for user to respond with their choices for all questions (e.g., "Q1: A, Q2: Custom - [details], Q3: B")
+        8. Update the spec by replacing each [NEEDS CLARIFICATION] marker with the user's selected or provided answer
+        9. Re-run validation after all clarifications are resolved
+
+   d. **Update Checklist**: After each validation iteration, update the checklist file with current pass/fail status
+
+7. Report completion with branch name, spec file path, checklist results, and readiness for the next phase (`/speckit.clarify` or `/speckit.plan`).
+
+**NOTE:** The script creates and checks out the new branch and initializes the spec file before writing.
+
+## General Guidelines
+
+## Quick Guidelines
+
+- Focus on **WHAT** users need and **WHY**.
+- Avoid HOW to implement (no tech stack, APIs, code structure).
+- Written for business stakeholders, not developers.
+- DO NOT create any checklists that are embedded in the spec. That will be a separate command.
+
+### Section Requirements
+
+- **Mandatory sections**: Must be completed for every feature
+- **Optional sections**: Include only when relevant to the feature
+- When a section doesn't apply, remove it entirely (don't leave as "N/A")
+
+### For AI Generation
+
+When creating this spec from a user prompt:
+
+1. **Make informed guesses**: Use context, industry standards, and common patterns to fill gaps
+2. **Document assumptions**: Record reasonable defaults in the Assumptions section
+3. **Limit clarifications**: Maximum 3 [NEEDS CLARIFICATION] markers - use only for critical decisions that:
+   - Significantly impact feature scope or user experience
+   - Have multiple reasonable interpretations with different implications
+   - Lack any reasonable default
+4. **Prioritize clarifications**: scope > security/privacy > user experience > technical details
+5. **Think like a tester**: Every vague requirement should fail the "testable and unambiguous" checklist item
+6. **Common areas needing clarification** (only if no reasonable default exists):
+   - Feature scope and boundaries (include/exclude specific use cases)
+   - User types and permissions (if multiple conflicting interpretations possible)
+   - Security/compliance requirements (when legally/financially significant)
+
+**Examples of reasonable defaults** (don't ask about these):
+
+- Data retention: Industry-standard practices for the domain
+- Performance targets: Standard web/mobile app expectations unless specified
+- Error handling: User-friendly messages with appropriate fallbacks
+- Authentication method: Standard session-based or OAuth2 for web apps
+- Integration patterns: RESTful APIs unless specified otherwise
+
+### Success Criteria Guidelines
+
+Success criteria must be:
+
+1. **Measurable**: Include specific metrics (time, percentage, count, rate)
+2. **Technology-agnostic**: No mention of frameworks, languages, databases, or tools
+3. **User-focused**: Describe outcomes from user/business perspective, not system internals
+4. **Verifiable**: Can be tested/validated without knowing implementation details
+
+**Good examples**:
+
+- "Users can complete checkout in under 3 minutes"
+- "System supports 10,000 concurrent users"
+- "95% of searches return results in under 1 second"
+- "Task completion rate improves by 40%"
+
+**Bad examples** (implementation-focused):
+
+- "API response time is under 200ms" (too technical, use "Users see results instantly")
+- "Database can handle 1000 TPS" (implementation detail, use user-facing metric)
+- "React components render efficiently" (framework-specific)
+- "Redis cache hit rate above 80%" (technology-specific)
+"""

.gemini/commands/speckit.tasks.toml

@@ -0,0 +1,141 @@
+description = "Generate an actionable, dependency-ordered tasks.md for the feature based on available design artifacts."
+
+prompt = """
+---
+description: Generate an actionable, dependency-ordered tasks.md for the feature based on available design artifacts.
+handoffs: 
+  - label: Analyze For Consistency
+    agent: speckit.analyze
+    prompt: Run a project analysis for consistency
+    send: true
+  - label: Implement Project
+    agent: speckit.implement
+    prompt: Start the implementation in phases
+    send: true
+---
+
+## User Input
+
+```text
+$ARGUMENTS
+```
+
+You **MUST** consider the user input before proceeding (if not empty).
+
+## Outline
+
+1. **Setup**: Run `.specify/scripts/bash/check-prerequisites.sh --json` from repo root and parse FEATURE_DIR and AVAILABLE_DOCS list. All paths must be absolute. For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\\''m Groot' (or double-quote if possible: "I'm Groot").
+
+2. **Load design documents**: Read from FEATURE_DIR:
+   - **Required**: plan.md (tech stack, libraries, structure), spec.md (user stories with priorities)
+   - **Optional**: data-model.md (entities), contracts/ (API endpoints), research.md (decisions), quickstart.md (test scenarios)
+   - Note: Not all projects have all documents. Generate tasks based on what's available.
+
+3. **Execute task generation workflow**:
+   - Load plan.md and extract tech stack, libraries, project structure
+   - Load spec.md and extract user stories with their priorities (P1, P2, P3, etc.)
+   - If data-model.md exists: Extract entities and map to user stories
+   - If contracts/ exists: Map endpoints to user stories
+   - If research.md exists: Extract decisions for setup tasks
+   - Generate tasks organized by user story (see Task Generation Rules below)
+   - Generate dependency graph showing user story completion order
+   - Create parallel execution examples per user story
+   - Validate task completeness (each user story has all needed tasks, independently testable)
+
+4. **Generate tasks.md**: Use `.specify.specify/templates/tasks-template.md` as structure, fill with:
+   - Correct feature name from plan.md
+   - Phase 1: Setup tasks (project initialization)
+   - Phase 2: Foundational tasks (blocking prerequisites for all user stories)
+   - Phase 3+: One phase per user story (in priority order from spec.md)
+   - Each phase includes: story goal, independent test criteria, tests (if requested), implementation tasks
+   - Final Phase: Polish & cross-cutting concerns
+   - All tasks must follow the strict checklist format (see Task Generation Rules below)
+   - Clear file paths for each task
+   - Dependencies section showing story completion order
+   - Parallel execution examples per story
+   - Implementation strategy section (MVP first, incremental delivery)
+
+5. **Report**: Output path to generated tasks.md and summary:
+   - Total task count
+   - Task count per user story
+   - Parallel opportunities identified
+   - Independent test criteria for each story
+   - Suggested MVP scope (typically just User Story 1)
+   - Format validation: Confirm ALL tasks follow the checklist format (checkbox, ID, labels, file paths)
+
+Context for task generation: {{args}}
+
+The tasks.md should be immediately executable - each task must be specific enough that an LLM can complete it without additional context.
+
+## Task Generation Rules
+
+**CRITICAL**: Tasks MUST be organized by user story to enable independent implementation and testing.
+
+**Tests are OPTIONAL**: Only generate test tasks if explicitly requested in the feature specification or if user requests TDD approach.
+
+### Checklist Format (REQUIRED)
+
+Every task MUST strictly follow this format:
+
+```text
+- [ ] [TaskID] [P?] [Story?] Description with file path
+```
+
+**Format Components**:
+
+1. **Checkbox**: ALWAYS start with `- [ ]` (markdown checkbox)
+2. **Task ID**: Sequential number (T001, T002, T003...) in execution order
+3. **[P] marker**: Include ONLY if task is parallelizable (different files, no dependencies on incomplete tasks)
+4. **[Story] label**: REQUIRED for user story phase tasks only
+   - Format: [US1], [US2], [US3], etc. (maps to user stories from spec.md)
+   - Setup phase: NO story label
+   - Foundational phase: NO story label  
+   - User Story phases: MUST have story label
+   - Polish phase: NO story label
+5. **Description**: Clear action with exact file path
+
+**Examples**:
+
+- ✅ CORRECT: `- [ ] T001 Create project structure per implementation plan`
+- ✅ CORRECT: `- [ ] T005 [P] Implement authentication middleware in src/middleware/auth.py`
+- ✅ CORRECT: `- [ ] T012 [P] [US1] Create User model in src/models/user.py`
+- ✅ CORRECT: `- [ ] T014 [US1] Implement UserService in src/services/user_service.py`
+- ❌ WRONG: `- [ ] Create User model` (missing ID and Story label)
+- ❌ WRONG: `T001 [US1] Create model` (missing checkbox)
+- ❌ WRONG: `- [ ] [US1] Create User model` (missing Task ID)
+- ❌ WRONG: `- [ ] T001 [US1] Create model` (missing file path)
+
+### Task Organization
+
+1. **From User Stories (spec.md)** - PRIMARY ORGANIZATION:
+   - Each user story (P1, P2, P3...) gets its own phase
+   - Map all related components to their story:
+     - Models needed for that story
+     - Services needed for that story
+     - Endpoints/UI needed for that story
+     - If tests requested: Tests specific to that story
+   - Mark story dependencies (most stories should be independent)
+
+2. **From Contracts**:
+   - Map each contract/endpoint → to the user story it serves
+   - If tests requested: Each contract → contract test task [P] before implementation in that story's phase
+
+3. **From Data Model**:
+   - Map each entity to the user story(ies) that need it
+   - If entity serves multiple stories: Put in earliest story or Setup phase
+   - Relationships → service layer tasks in appropriate story phase
+
+4. **From Setup/Infrastructure**:
+   - Shared infrastructure → Setup phase (Phase 1)
+   - Foundational/blocking tasks → Foundational phase (Phase 2)
+   - Story-specific setup → within that story's phase
+
+### Phase Structure
+
+- **Phase 1**: Setup (project initialization)
+- **Phase 2**: Foundational (blocking prerequisites - MUST complete before user stories)
+- **Phase 3+**: User Stories in priority order (P1, P2, P3...)
+  - Within each story: Tests (if requested) → Models → Services → Endpoints → Integration
+  - Each phase should be a complete, independently testable increment
+- **Final Phase**: Polish & Cross-Cutting Concerns
+"""

.gemini/commands/speckit.taskstoissues.toml

@@ -0,0 +1,32 @@
+description = "Convert existing tasks into actionable, dependency-ordered GitHub issues for the feature based on available design artifacts."
+
+prompt = """
+---
+description: Convert existing tasks into actionable, dependency-ordered GitHub issues for the feature based on available design artifacts.
+tools: ['github/github-mcp-server/issue_write']
+---
+
+## User Input
+
+```text
+$ARGUMENTS
+```
+
+You **MUST** consider the user input before proceeding (if not empty).
+
+## Outline
+
+1. Run `.specify/scripts/bash/check-prerequisites.sh --json --require-tasks --include-tasks` from repo root and parse FEATURE_DIR and AVAILABLE_DOCS list. All paths must be absolute. For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\\''m Groot' (or double-quote if possible: "I'm Groot").
+1. From the executed script, extract the path to **tasks**.
+1. Get the Git remote by running:
+
+```bash
+git config --get remote.origin.url
+```
+
+**ONLY PROCEED TO NEXT STEPS IF THE REMOTE IS A GITHUB URL**
+
+1. For each task in the list, use the GitHub MCP server to create a new issue in the repository that is representative of the Git remote.
+
+**UNDER NO CIRCUMSTANCES EVER CREATE ISSUES IN REPOSITORIES THAT DO NOT MATCH THE REMOTE URL**
+"""

GEMINI.md

@@ -0,0 +1,29 @@
+# Document-MCP Development Guidelines
+
+Auto-generated from all feature plans. Last updated: 2025-11-25
+
+## Active Technologies
+
+- Python 3.11+ (Backend), TypeScript/React 18 (Frontend) + `react-force-graph-2d` (New), `FastAPI`, `sqlite3` (002-add-graph-view)
+
+## Project Structure
+
+```text
+src/
+tests/
+```
+
+## Commands
+
+cd src [ONLY COMMANDS FOR ACTIVE TECHNOLOGIES][ONLY COMMANDS FOR ACTIVE TECHNOLOGIES] pytest [ONLY COMMANDS FOR ACTIVE TECHNOLOGIES][ONLY COMMANDS FOR ACTIVE TECHNOLOGIES] ruff check .
+
+## Code Style
+
+Python 3.11+ (Backend), TypeScript/React 18 (Frontend): Follow standard conventions
+
+## Recent Changes
+
+- 002-add-graph-view: Added Python 3.11+ (Backend), TypeScript/React 18 (Frontend) + `react-force-graph-2d` (New), `FastAPI`, `sqlite3`
+
+<!-- MANUAL ADDITIONS START -->
+<!-- MANUAL ADDITIONS END -->

specs/002-add-graph-view/checklists/requirements.md

@@ -0,0 +1,34 @@
+# Specification Quality Checklist: Interactive Graph View
+
+**Purpose**: Validate specification completeness and quality before proceeding to planning
+**Created**: 2025-11-25
+**Feature**: [spec.md](../spec.md)
+
+## Content Quality
+
+- [x] No implementation details (languages, frameworks, APIs)
+- [x] Focused on user value and business needs
+- [x] Written for non-technical stakeholders
+- [x] All mandatory sections completed
+
+## Requirement Completeness
+
+- [x] No [NEEDS CLARIFICATION] markers remain
+- [x] Requirements are testable and unambiguous
+- [x] Success criteria are measurable
+- [x] Success criteria are technology-agnostic (no implementation details)
+- [x] All acceptance scenarios are defined
+- [x] Edge cases are identified
+- [x] Scope is clearly bounded
+- [x] Dependencies and assumptions identified
+
+## Feature Readiness
+
+- [x] All functional requirements have clear acceptance criteria
+- [x] User scenarios cover primary flows
+- [x] Feature meets measurable outcomes defined in Success Criteria
+- [x] No implementation details leak into specification
+
+## Notes
+
+- Initial validation passed. Spec is clean of technical debt and specific library references while clearly defining behavior.

specs/002-add-graph-view/contracts/graph-api.yaml

@@ -0,0 +1,65 @@
+openapi: 3.0.0
+info:
+  title: Document MCP Graph API
+  version: 1.0.0
+paths:
+  /api/graph:
+    get:
+      summary: Retrieve graph visualization data
+      operationId: getGraphData
+      responses:
+        '200':
+          description: Successful graph data retrieval
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/GraphData'
+        '500':
+          description: Server error
+components:
+  schemas:
+    GraphNode:
+      type: object
+      required:
+        - id
+        - label
+      properties:
+        id:
+          type: string
+          description: Unique identifier (note path)
+        label:
+          type: string
+          description: Note title
+        val:
+          type: integer
+          default: 1
+          description: Node size/weight based on connectivity
+        group:
+          type: string
+          description: Categorical group (e.g. folder)
+    GraphLink:
+      type: object
+      required:
+        - source
+        - target
+      properties:
+        source:
+          type: string
+          description: Source note ID
+        target:
+          type: string
+          description: Target note ID
+    GraphData:
+      type: object
+      required:
+        - nodes
+        - links
+      properties:
+        nodes:
+          type: array
+          items:
+            $ref: '#/components/schemas/GraphNode'
+        links:
+          type: array
+          items:
+            $ref: '#/components/schemas/GraphLink'

specs/002-add-graph-view/data-model.md

@@ -0,0 +1,40 @@
+# Data Model: Graph View
+
+## Entities
+
+### GraphNode
+Represents a single note in the graph.
+
+| Field | Type | Description |
+|-------|------|-------------|
+| `id` | `str` | Unique identifier (Note Path). |
+| `label` | `str` | Display title of the note. |
+| `val` | `int` | Weight/Size of the node (default: 1 + link_degree). |
+| `group` | `str` | Grouping category (e.g., top-level folder). |
+
+### GraphLink
+Represents a directed connection between two notes.
+
+| Field | Type | Description |
+|-------|------|-------------|
+| `source` | `str` | ID of the source note. |
+| `target` | `str` | ID of the target note. |
+
+### GraphData
+The top-level payload returned by the API.
+
+| Field | Type | Description |
+|-------|------|-------------|
+| `nodes` | `List[GraphNode]` | All notes in the vault. |
+| `links` | `List[GraphLink]` | All resolved connections. |
+
+## Database Mapping
+
+-   **Nodes**: Sourced from `note_metadata` table.
+    -   `id` <- `note_path`
+    -   `label` <- `title`
+    -   `group` <- `note_path` (parsed parent directory)
+-   **Links**: Sourced from `note_links` table.
+    -   `source` <- `source_path`
+    -   `target` <- `target_path`
+    -   Filter: `is_resolved = 1`

specs/002-add-graph-view/plan.md

@@ -0,0 +1,82 @@
+# Implementation Plan: Interactive Graph View
+
+**Branch**: `002-add-graph-view` | **Date**: 2025-11-25 | **Spec**: [spec.md](spec.md)
+**Input**: Feature specification from `/specs/002-add-graph-view/spec.md`
+
+**Note**: This template is filled in by the `/speckit.plan` command. See `.specify/templates/commands/plan.md` for the execution workflow.
+
+## Summary
+
+Add an interactive force-directed graph visualization to the frontend (`react-force-graph-2d`) backed by a new API endpoint (`GET /api/graph`) that serves node and link data derived from the existing SQLite index.
+
+## Technical Context
+
+**Language/Version**: Python 3.11+ (Backend), TypeScript/React 18 (Frontend)
+**Primary Dependencies**: `react-force-graph-2d` (New), `FastAPI`, `sqlite3`
+**Storage**: SQLite (`note_metadata`, `note_links` tables)
+**Testing**: `pytest` (Backend), Manual/E2E (Frontend)
+**Target Platform**: Web Browser (Canvas/WebGL support required)
+**Project Type**: Web Application (Full Stack)
+**Performance Goals**: Render <1000 nodes in <2 seconds.
+**Constraints**: Must support Light/Dark mode dynamically.
+**Scale/Scope**: Personal knowledge base scale (hundreds to thousands of notes).
+
+## Constitution Check
+
+*GATE: Must pass before Phase 0 research. Re-check after Phase 1 design.*
+
+-   **Library-First**: N/A (Application feature).
+-   **CLI Interface**: N/A (UI feature).
+-   **Test-First**: Backend endpoint will be tested via `pytest`.
+-   **Simplicity**: Using a proven library (`react-force-graph`) to avoid complex custom D3 implementations.
+
+## Project Structure
+
+### Documentation (this feature)
+
+```text
+specs/002-add-graph-view/
+├── plan.md              # This file
+├── research.md          # Phase 0 output
+├── data-model.md        # Phase 1 output
+├── quickstart.md        # Phase 1 output
+├── contracts/           # Phase 1 output
+│   └── graph-api.yaml
+└── tasks.md             # Phase 2 output
+```
+
+### Source Code (repository root)
+
+```text
+backend/
+├── src/
+│   ├── api/
+│   │   └── routes/
+│   │       └── graph.py       # New endpoint
+│   ├── models/
+│   │   └── graph.py           # New Pydantic models
+│   └── services/
+│       └── indexer.py         # Update: add get_graph_data()
+└── tests/
+    └── unit/
+        └── test_graph_api.py  # New tests
+
+frontend/
+├── src/
+│   ├── components/
+│   │   └── GraphView.tsx      # New component
+│   ├── pages/
+│   │   └── MainApp.tsx        # Update: Add toggle
+│   ├── services/
+│   │   └── api.ts             # Update: Add getGraphData()
+│   └── types/
+│       └── graph.ts           # New types
+```
+
+**Structure Decision**: Standard Full-Stack layout.
+
+## Complexity Tracking
+
+| Violation | Why Needed | Simpler Alternative Rejected Because |
+|-----------|------------|-------------------------------------|
+| N/A       |            |                                     |

specs/002-add-graph-view/quickstart.md

@@ -0,0 +1,42 @@
+# Quickstart: Graph View
+
+## Prerequisites
+-   Existing backend running with indexed notes.
+-   Frontend dependencies installed.
+
+## Installation
+
+1.  **Frontend Dependencies**:
+    ```bash
+    cd frontend
+    npm install react-force-graph-2d
+    ```
+
+2.  **Backend Setup**:
+    No extra packages needed (uses existing `sqlite3`).
+
+## Verification Steps
+
+1.  **Start Backend**:
+    ```bash
+    ./start-dev.sh
+    ```
+
+2.  **Open Application**:
+    Navigate to `http://localhost:5173`.
+
+3.  **Switch to Graph View**:
+    -   Locate the "Graph" icon/button in the top toolbar (next to "New Note").
+    -   Click it.
+    -   **Verify**: The center panel should replace the note editor with a dark/light canvas showing nodes.
+
+4.  **Interact**:
+    -   **Hover**: Mouse over a node; see the tooltip with the note title.
+    -   **Drag**: Click and drag a node; it should move and pull connected nodes.
+    -   **Click**: Click a node; the view should switch back to "Note View" and open that specific note.
+    -   **Zoom**: Scroll wheel to zoom in/out.
+
+5.  **Check Unlinked Notes**:
+    -   Create a new note with no links.
+    -   Switch to Graph View.
+    -   **Verify**: The new note appears as a standalone node.

specs/002-add-graph-view/research.md

@@ -0,0 +1,67 @@
+# Phase 0: Research & Technical Decisions
+
+## 1. Graph Visualization Library
+
+**Decision**: Use `react-force-graph-2d`.
+
+**Rationale**:
+-   **Performance**: Uses HTML5 Canvas/WebGL for rendering, capable of handling thousands of nodes (meeting the "personal knowledge base" scale requirement).
+-   **React Integration**: Native React component wrapper around `force-graph`, managing the lifecycle and updates declarative.
+-   **Feature Set**: Built-in zoom/pan, auto-centering, node/link interactions (hover/click), and flexible styling.
+-   **Maintainability**: Widely used, active community.
+
+**Alternatives Considered**:
+-   `vis-network`: Good but heavier and imperative API is harder to integrate cleanly with modern React hooks.
+-   `d3-force` (raw): Too low-level. Would require rebuilding canvas rendering, zoom/pan logic, and interaction handlers from scratch.
+-   `cytoscape.js`: Powerful but focused more on graph theory analysis; visual customization is CSS-like but sometimes more complex for "floating particle" aesthetics.
+
+## 2. Data Structure & API
+
+**Decision**: Flat structure with `nodes` and `links` arrays.
+
+**Schema**:
+```json
+{
+  "nodes": [
+    { "id": "path/to/note.md", "label": "Note Title", "val": 1, "group": "folder-name" }
+  ],
+  "links": [
+    { "source": "path/to/source.md", "target": "path/to/target.md" }
+  ]
+}
+```
+
+**Rationale**:
+-   Matches the expected input format of `react-force-graph`.
+-   `val` property allows automatic node sizing based on degree (calculated on backend or frontend). Backend calculation is preferred for caching/performance.
+-   `id` uses the file path to ensure uniqueness and easy mapping back to navigation events.
+
+## 3. Theme Integration
+
+**Decision**: Pass dynamic colors via React props, reading from CSS variables or a ThemeContext.
+
+**Strategy**:
+-   The `GraphView` component will hook into the current theme (light/dark).
+-   Colors for background, nodes, and text will be passed to `<ForceGraph2D />`.
+-   **Light Mode**: White background, dark grey nodes/links.
+-   **Dark Mode**: `hsl(var(--background))` (usually dark), light grey nodes.
+-   **Groups**: Use a categorical color scale for folders (e.g., D3 scale or a fixed palette).
+
+## 4. Unlinked Notes
+
+**Decision**: Include all notes in the `nodes` array, even if they have no entries in `links`.
+
+**Physics**:
+-   The force simulation will naturally push unconnected nodes away from the center cluster but keep them within the viewport if a bounding box or gravity is applied.
+-   We will apply a weak `d3.forceManyBody` (repulsion) and a central `d3.forceCenter` to keep the "cloud" visible.
+
+## 5. Backend Implementation
+
+**Decision**: Add `get_graph_data` to `IndexerService`.
+
+**Logic**:
+1.  Fetch all notes from `note_metadata` (id, title).
+2.  Fetch all links from `note_links` where `is_resolved=1`.
+3.  Compute link counts for node sizing (optional optimization: do this in SQL or Python).
+4.  Return JSON.
+5.  **Caching**: Use a simple in-memory cache with a short TTL (e.g., 5 minutes) or invalidation on note create/update events to ensure sub-2s response times for large vaults. *For V1, direct SQL query is likely fast enough for <1000 notes.*

specs/002-add-graph-view/spec.md

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+# Feature Specification: Interactive Graph View
+
+**Feature**: 002-add-graph-view
+**Status**: Draft
+**Created**: 2025-11-25
+
+## 1. Summary
+
+An interactive, force-directed graph visualization of the note vault that displays notes as nodes and wikilinks as connections. This view provides users with a high-level understanding of their knowledge base's structure and an alternative method for navigation.
+
+## 2. Problem Statement
+
+**Context**: Currently, users browse notes via a linear directory tree or search results.
+**Problem**: These views do not reveal the structural relationships, clusters, or connectivity density of the knowledge base. Users cannot easily see which notes are central "hubs" or which are isolated "orphans."
+**Impact**: Reduces the ability to maintain a well-connected knowledge garden and limits discovery of related concepts.
+
+## 3. Goals & Non-Goals
+
+### Goals
+-   Provide a visual representation of the vault's link structure.
+-   Enable intuitive navigation by clicking on nodes in the graph.
+-   Highlight important notes through visual properties (e.g., node size based on connectivity).
+-   Identify unlinked (orphan) notes visually.
+
+### Non-Goals
+-   Full 3D visualization (2D is sufficient for V1).
+-   Complex graph editing (e.g., creating links by dragging lines between nodes).
+-   Advanced graph analytics (centrality metrics beyond simple degree).
+
+## 4. User Scenarios
+
+### Scenario 1: Structural Overview
+**User**: A researcher managing a large knowledge base.
+**Action**: Clicks the "Graph View" toggle button in the application toolbar.
+**Result**: The note editor is replaced by a full-panel canvas showing a web of connected nodes. The user pans and zooms to explore different clusters of notes, identifying a dense cluster related to "Project X."
+
+### Scenario 2: Visual Navigation
+**User**: Looking for a specific core concept note.
+**Action**: Identifies a large node in the center of the graph (indicating many connections). hovers over it to confirm the title "Core Concepts," and clicks it.
+**Result**: The application switches back to the standard note view, displaying the "Core Concepts" note.
+
+### Scenario 3: Orphan Identification
+**User**: Wants to improve note connectivity.
+**Action**: Opens the graph view and looks for small nodes floating unconnected at the periphery of the main cluster.
+**Result**: Identifies an isolated note, clicks it to open, and adds links to connect it to the rest of the graph.
+
+## 5. Functional Requirements
+
+### 5.1 Graph Visualization
+-   **Nodes**: Represent individual notes.
+-   **Edges**: Represent resolved wikilinks between notes.
+-   **Node Sizing**: Nodes must scale dynamically based on their number of connections (link degree); heavily linked notes appear larger.
+-   **Unlinked Notes**: Notes with no connections must be visible, floating freely within the simulation (not hidden).
+-   **Theme Compatibility**: The graph background and element colors must adapt to the application's current theme (Light/Dark mode).
+
+### 5.2 Interaction
+-   **Navigation**: Clicking a node must activate that note in the main view and switch away from the graph.
+-   **Controls**: Users must be able to pan the canvas and zoom in/out.
+-   **Hover Details**: Hovering over a node must display a tooltip with the note's title.
+-   **Physics**: Nodes should naturally repel each other to reduce overlap, with links acting as springs to hold connected notes together.
+
+### 5.3 UI Integration
+-   **Access Control**: A toggle control (e.g., "Graph" vs. "Note") must be available in the main application toolbar.
+-   **Persistence**: The graph view should retain its state (zoom level, position) transiently while the app is open, if possible, or reload quickly.
+
+### 5.4 Data Source
+-   **Graph Data**: The system must generate a graph payload containing:
+    -   Nodes: ID (path), Label (title), Size metric (link count), Grouping (folder).
+    -   Links: Source, Target.
+-   **Folder Grouping**: Nodes should ideally be visually distinct (e.g., by color) based on their top-level folder or category.
+
+## 6. Success Criteria
+
+1.  **Load Time**: Graph renders with < 2 seconds latency for a vault of up to 1,000 notes.
+2.  **Visual Clarity**: Unlinked notes are clearly distinguishable from the main connected component.
+3.  **Navigation Accuracy**: Clicking a node opens the correct corresponding note 100% of the time.
+4.  **Theme Consistency**: Switching between light and dark modes updates the graph colors immediately or upon next render without requiring a reload.
+
+## 7. Assumptions & Dependencies
+
+-   **Browser Support**: The user's environment supports WebGL or HTML5 Canvas for performant rendering.
+-   **Data Volume**: The initial implementation target is for personal knowledge bases (hundreds to low thousands of notes), not enterprise scale (millions).
+-   **Link Resolution**: Only "resolved" links (links pointing to existing notes) generate edges.
+
+## 8. Questions & Clarifications
+
+*(None required at this stage. Standard force-directed graph behavior is assumed for layout logic.)*

specs/002-add-graph-view/tasks.md

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+# Tasks: Interactive Graph View
+
+**Feature**: 002-add-graph-view
+**Status**: Pending
+**Spec**: [spec.md](spec.md)
+
+## Phase 1: Setup (Project Initialization)
+
+*Goal: Install dependencies and define core data structures.*
+
+- [ ] T001 [P] Install `react-force-graph-2d` dependency in frontend/package.json
+- [ ] T002 [P] Define Pydantic models (`GraphNode`, `GraphLink`, `GraphData`) in backend/src/models/graph.py
+- [ ] T003 [P] Define TypeScript interfaces (`GraphNode`, `GraphLink`, `GraphData`) in frontend/src/types/graph.ts
+
+## Phase 2: Foundational Tasks
+
+*Goal: Establish core backend logic required for all user stories.*
+
+- [ ] T004 Update `IndexerService` with `get_graph_data()` method in backend/src/services/indexer.py
+- [ ] T005 Implement `GET /api/graph` endpoint in backend/src/api/routes/graph.py
+- [ ] T006 Register graph router in backend/src/api/main.py
+- [ ] T007 [P] Add `getGraphData` function to frontend/src/services/api.ts
+- [ ] T008 Create unit tests for graph API in backend/tests/unit/test_graph_api.py
+
+## Phase 3: User Story 1 - Structural Overview
+
+*Goal: Visualize the note vault structure as an interactive graph.*
+
+- [ ] T009 [US1] Create `GraphView` component with basic force-directed graph in frontend/src/components/GraphView.tsx
+- [ ] T010 [US1] Integrate `getGraphData` hook into `GraphView` to load real data in frontend/src/components/GraphView.tsx
+- [ ] T011 [US1] Add "Graph View" toggle button and conditional rendering logic in frontend/src/pages/MainApp.tsx
+- [ ] T012 [US1] Style the graph container to occupy the full center panel in frontend/src/pages/MainApp.tsx
+
+## Phase 4: User Story 2 - Visual Navigation
+
+*Goal: Enable navigation from the graph to specific notes.*
+
+- [ ] T013 [US2] Implement `onNodeClick` handler to trigger `onSelectNote` callback in frontend/src/components/GraphView.tsx
+- [ ] T014 [US2] Verify node hover tooltips display note titles correctly in frontend/src/components/GraphView.tsx
+- [ ] T015 [US2] Ensure switching back from Graph View restores the standard Note View in frontend/src/pages/MainApp.tsx
+
+## Phase 5: User Story 3 - Orphan Identification & Visuals
+
+*Goal: Highlight node connectivity and grouping.*
+
+- [ ] T016 [US3] Implement node sizing logic (`val` based on link count) in backend/src/services/indexer.py
+- [ ] T017 [US3] [P] Implement theme support (Dynamic Light/Dark colors) in frontend/src/components/GraphView.tsx
+- [ ] T018 [US3] [P] Implement categorical node coloring based on `group` (folder) in frontend/src/components/GraphView.tsx
+
+## Final Phase: Polish
+
+*Goal: Ensure stability and good UX.*
+
+- [ ] T019 Implement loading state spinner in `GraphView` while fetching data in frontend/src/components/GraphView.tsx
+- [ ] T020 Implement error handling banner in `GraphView` in frontend/src/components/GraphView.tsx
+
+## Dependencies
+
+1.  **Setup (T001-T003)**: Must be done first.
+2.  **Foundational (T004-T008)**: Depends on Setup. Required for all US phases.
+3.  **US1 (T009-T012)**: Depends on Foundational.
+4.  **US2 (T013-T015)**: Depends on US1 (needs GraphView component).
+5.  **US3 (T016-T018)**: Partially parallel with US2, but T016 (Backend sizing) is backend-only. T017/T018 modify GraphView.
+6.  **Polish (T019-T020)**: Can be done anytime after US1.
+
+## Parallel Execution Strategy
+
+-   **Backend vs Frontend**: Once models (T002/T003) are agreed upon, T004-T006 (Backend) can run parallel to T007-T009 (Frontend).
+-   **Within US3**: T017 (Theme) and T018 (Group Colors) are independent UI tasks.
+
+## Implementation Strategy
+
+1.  **MVP**: Complete Phases 1, 2, and 3 (US1). This delivers the core value: seeing the graph.
+2.  **Interaction**: Phase 4 adds the critical navigation workflow.
+3.  **Visuals**: Phase 5 enhances utility (orphans, importance).