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Update app.py
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app.py
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@@ -1,18 +1,42 @@
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import streamlit as st
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from transformers import
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@st.cache_resource(show_spinner=False)
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def load_generator():
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model_name = "ayyuce/NeoProtein-GPT"
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config = AutoConfig.from_pretrained(model_name, model_type="gpt2")
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tokenizer = AutoTokenizer.from_pretrained(model_name)
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model = AutoModelForCausalLM.from_pretrained(model_name, config=
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gen_pipeline = pipeline("text-generation", model=model, tokenizer=tokenizer)
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return gen_pipeline
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st.title("NeoProtein-GPT")
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st.write("Welcome to the NeoProtein-GPT interface. Enter a protein prompt and generate new protein sequences!")
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user_prompt = st.text_area("Enter your prompt", value="Design a novel protein sequence with a unique binding site:")
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if st.button("Generate Protein Sequence"):
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@@ -20,4 +44,4 @@ if st.button("Generate Protein Sequence"):
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outputs = load_generator()(user_prompt, max_new_tokens=200, do_sample=True, temperature=0.7)
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generated_text = outputs[0]["generated_text"]
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st.subheader("Generated Sequence:")
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st.code(generated_text, language="python")
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import streamlit as st
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from transformers import pipeline, AutoModelForCausalLM, AutoTokenizer, AutoConfig
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import json
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import os
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model_name = "ayyuce/NeoProtein-GPT"
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config_path = os.path.join(os.path.expanduser("~"), f".cache/huggingface/hub/models--{model_name.replace('/', '--')}/snapshots/d462becc43e0c3e4792cfa78efd029bed5dcfeb8/config.json")
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if not os.path.isfile(config_path):
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config = {
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"model_type": "gpt2",
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"architectures": ["GPT2LMHeadModel"],
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"vocab_size": 50257,
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"n_positions": 1024,
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"n_ctx": 1024,
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"n_embd": 768,
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"n_layer": 12,
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"n_head": 12,
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"activation_function": "gelu",
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"initializer_range": 0.02,
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"layer_norm_epsilon": 1e-5,
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"bos_token_id": 50256,
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"eos_token_id": 50256,
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}
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os.makedirs(os.path.dirname(config_path), exist_ok=True)
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with open(config_path, "w") as f:
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json.dump(config, f)
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@st.cache_resource(show_spinner=False)
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def load_generator():
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tokenizer = AutoTokenizer.from_pretrained(model_name)
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model = AutoModelForCausalLM.from_pretrained(model_name, config=AutoConfig.from_pretrained(model_name))
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gen_pipeline = pipeline("text-generation", model=model, tokenizer=tokenizer)
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return gen_pipeline
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st.title("NeoProtein-GPT")
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st.write("Welcome to the NeoProtein-GPT interface. Enter a protein prompt and generate new protein sequences!")
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user_prompt = st.text_area("Enter your prompt", value="Design a novel protein sequence with a unique binding site:")
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if st.button("Generate Protein Sequence"):
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outputs = load_generator()(user_prompt, max_new_tokens=200, do_sample=True, temperature=0.7)
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generated_text = outputs[0]["generated_text"]
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st.subheader("Generated Sequence:")
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st.code(generated_text, language="python")
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