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---
library_name: transformers
license: mit
base_model: microsoft/BiomedNLP-BiomedBERT-large-uncased-abstract
tags:
- generated_from_trainer
datasets:
- source_data
metrics:
- precision
- recall
- f1
model-index:
- name: SourceData_NER_v1_0_0_PubMedBERT_large
results:
- task:
name: Token Classification
type: token-classification
dataset:
name: source_data
type: source_data
config: NER
split: validation
args: NER
metrics:
- name: Precision
type: precision
value: 0.8202296075899624
- name: Recall
type: recall
value: 0.8535064404007361
- name: F1
type: f1
value: 0.8365372228504359
---
<!-- This model card has been generated automatically according to the information the Trainer had access to. You
should probably proofread and complete it, then remove this comment. -->
# SourceData_NER_v1_0_0_PubMedBERT_large
This model is a fine-tuned version of [microsoft/BiomedNLP-BiomedBERT-large-uncased-abstract](https://huggingface.co/microsoft/BiomedNLP-BiomedBERT-large-uncased-abstract) on the source_data dataset.
It achieves the following results on the evaluation set:
- Loss: 0.1352
- Accuracy Score: 0.9575
- Precision: 0.8202
- Recall: 0.8535
- F1: 0.8365
## Model description
More information needed
## Intended uses & limitations
More information needed
## Training and evaluation data
More information needed
## Training procedure
### Training hyperparameters
The following hyperparameters were used during training:
- learning_rate: 5e-05
- train_batch_size: 16
- eval_batch_size: 64
- seed: 42
- gradient_accumulation_steps: 4
- total_train_batch_size: 64
- optimizer: Use adafactor and the args are:
No additional optimizer arguments
- lr_scheduler_type: linear
- num_epochs: 2.0
### Training results
| Training Loss | Epoch | Step | Validation Loss | Accuracy Score | Precision | Recall | F1 |
|:-------------:|:------:|:----:|:---------------:|:--------------:|:---------:|:------:|:------:|
| 0.108 | 0.9994 | 863 | 0.1354 | 0.9557 | 0.8133 | 0.8463 | 0.8294 |
| 0.0778 | 1.9988 | 1726 | 0.1352 | 0.9575 | 0.8202 | 0.8535 | 0.8365 |
### Framework versions
- Transformers 4.46.3
- Pytorch 1.13.1+cu117
- Datasets 3.1.0
- Tokenizers 0.20.3
|