ctheodoris
/

Geneformer

Model card Files Files and versions

360 MB

19 contributors

History: 113 commits

Christina Theodoris

update type of null_dict_list in docstring

79788b6 almost 2 years ago

docs
add readthedocs link to model card almost 2 years ago
examples
Add functions for extracting gene embeddings, move state_embs_dict outside isp, fix bugs in isp about 2 years ago
fine_tuned_models
Add fine-tuned CellClassifier for cardiomyopathy over 2 years ago
geneformer-12L-30M
Upload 12 layer Geneformer model over 2 years ago
geneformer
update type of null_dict_list in docstring almost 2 years ago
.gitattributes

1.3 kB

Adding `safetensors` variant of this model (#209) over 2 years ago
.gitignore

3.08 kB

Add gitignore file over 2 years ago
.pre-commit-config.yaml

737 Bytes

Add pre-commit config about 2 years ago
.readthedocs.yaml

396 Bytes

update readthedocs.yaml almost 2 years ago
MANIFEST.in

127 Bytes

Fixes to stats and adding gene dict attempt number 2 (#13) over 2 years ago
README.md

6.87 kB

add readthedocs link to model card almost 2 years ago
config.json

565 Bytes

upload Geneformer 6L-30M config over 3 years ago
model.safetensors

41.2 MB
xet

Adding `safetensors` variant of this model (#209) over 2 years ago
pytorch_model.bin
Detected Pickle imports (4)
- "torch._utils._rebuild_tensor_v2",
- "torch.LongStorage",
- "torch.FloatStorage",
- "collections.OrderedDict"
What is a pickle import?
41.2 MB
xet

upload Geneformer 6L-30M over 3 years ago
requirements.txt

281 Bytes

update dependencies, reinstate compatibility with python<3.9 with typing for List almost 2 years ago
setup.py

972 Bytes

update dependencies, reinstate compatibility with python<3.9 with typing for List almost 2 years ago
training_args.bin
Detected Pickle imports (4)
- "transformers.trainer_utils.IntervalStrategy",
- "torch.device",
- "transformers.training_args.TrainingArguments",
- "transformers.trainer_utils.SchedulerType"
How to fix it?
2.61 kB
xet

upload training args for Geneformer 6L-30M over 3 years ago