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Geneformer

Model card Files Files and versions

Geneformer / geneformer

3.16 MB

19 contributors

History: 80 commits

ctheodoris's picture

fix cell state gene embeddings bug (#345)

c0e7b19 verified over 1 year ago

__init__.py

656 Bytes

fix cell state gene embeddings bug (#345) over 1 year ago
classifier.py

60.7 kB

patch datasets save_to_disk over 1 year ago
classifier_utils.py

16.7 kB

Update for gene classification (#330) over 1 year ago
collator_for_classification.py

29.8 kB

Subclass collator for cell classification over 2 years ago
emb_extractor.py

29.3 kB

Add classifier module and examples almost 2 years ago
evaluation_utils.py

9.76 kB

update examples for predict_eval and handle roc for 2 cell classes over 1 year ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card about 3 years ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
xet

Upload gene_name_id_dict.pkl (#14) over 2 years ago
in_silico_perturber.py

38.9 kB

fix cell state gene embeddings bug (#345) over 1 year ago
in_silico_perturber_stats.py

43.2 kB

Add classifier module and examples almost 2 years ago
perturber_utils.py

26.9 kB

fix cell state gene embeddings bug (#345) over 1 year ago
pretrainer.py

37.1 kB

update kwargs for pretrainer over 1 year ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
788 kB

Update token_dictionary.pkl over 2 years ago
tokenizer.py

16.5 kB

fix cell state gene embeddings bug (#345) over 1 year ago