<p>Yes, use .fasta , you can try to convert your fastq files with NextGen Workbench for example.</p>

CC BY-SA 3.0
2018-04-28T13:53:59.670Z
Hello, thanks for the answer. It would be useful if you would provide link to the tool you suggest.
Kamil S Jaron
CC BY-SA 3.0
2018-04-25T11:43:19.423Z
2018-04-25T11:43:19.423Z
Laurens Schroyens
<p>I am trying to analyze my .fastq files (MiSeq exon reads) with the jMHC software, but output files I have obtained have no results.</p>

<p>I think I might be doing something wrong during the first step: "connect to database". 
Because on the "import/extracting" step, I open all my .fastq files, click "Start", and it shows this message: </p>

<blockquote>
  <p>"Success! Processed: 139, Imported: 0".</p>
</blockquote>

<p>So I assume it is reading the files OK, but not importing them to the "database"? Could it be the extension of my files? The software says it operates on FASTA files. Are .fastq files not compatible?</p>

<p>Anybody that has successfully run this program could give me a hand?</p>

<sequence-analysis><errors>
Error while Importing fastq sequences to jMHC software
# Error while Importing fastq sequences to jMHC software

(Asked by: username_0 on 2018-04-03)

I am trying to analyze my .fastq files (MiSeq exon reads) with the jMHC software, but output files I have obtained have no results.

I think I might be doing something wrong during the first step: "connect to database".
Because on the "import/extracting" step, I open all my .fastq files, click "Start", and it shows this message:

> "Success! Processed: 139, Imported: 0".

So I assume it is reading the files OK, but not importing them to the "database"? Could it be the extension of my files? The software says it operates on FASTA files. Are .fastq files not compatible?

Anybody that has successfully run this program could give me a hand?

**Tags:** sequence-analysis, errors

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## 1 answers

### Answer by username_1 on 2018-04-25. Score: 1

Yes, use .fasta , you can try to convert your fastq files with NextGen Workbench for example.

> **Comments:**
> **username_2**: Hello, thanks for the answer. It would be useful if you would provide link to the tool you suggest.  

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