<p>I am working on B cell lymphoma of dogs to identify the specific type of mutations related to this disease. I am performing NGS whole genome sequencing analysis. I have performed the variant annotation using ANNOVAR and received thousands of variants. I want to separate the cancer related variants among these, is there any online platforms that I can compare my variants with? OR how to proceed with this data? Could someone please help? Thanks.</p>

CC BY-SA 4.0
2024-04-21T01:47:44.490Z
Please edit the question to limit it to a specific problem with enough detail to identify an adequate answer.
Community
CC BY-SA 4.0
2024-04-22T21:42:34.810Z
What type of variants are you looking for? (Rare vs common, SNVs vs amplifications/deletions vs fusions, etc.) And  what are you using as a control?
Sarah
<ngs>
How to extract the mutations specific to cancer after variant annotation in NGS analysis
# How to extract the mutations specific to cancer after variant annotation in NGS analysis

(Asked by: username_0 on 2024-04-21)

I am working on B cell lymphoma of dogs to identify the specific type of mutations related to this disease. I am performing NGS whole genome sequencing analysis. I have performed the variant annotation using ANNOVAR and received thousands of variants. I want to separate the cancer related variants among these, is there any online platforms that I can compare my variants with? OR how to proceed with this data? Could someone please help? Thanks.

**Tags:** ngs
> **Comments:**
> **username_1**: Please edit the question to limit it to a specific problem with enough detail to identify an adequate answer.  
> **username_2**: What type of variants are you looking for? (Rare vs common, SNVs vs amplifications/deletions vs fusions, etc.) And  what are you using as a control?  

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