<p>This can be a good starting point: <code>table(your_seurat_object@meta.data$the_column_that_has_the_labels_of_interest)</code></p>
<p>Basically you will be counting the number of rows (each single cell is a row) in the <code>meta.data</code> slot of your Seurat object for each level of your column of interest (for example cell type annotations).</p>

CC BY-SA 4.0
2023-07-06T12:51:34.640Z
2023-07-06T12:51:34.640Z
haci
<p><a href="https://i.sstatic.net/2W5L6.png" rel="nofollow noreferrer"><img src="https://i.sstatic.net/2W5L6.png" alt="enter image description here" /></a></p>
<p>I tried to quantify the number of cells of Fzd9+ Macrophage.</p>
<p>how can I know the cell count?</p>
<p>thank you</p>

CC BY-SA 4.0
2023-07-06T12:29:35.660Z
Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.
Community
CC BY-SA 4.0
2023-07-08T07:39:19.637Z
Does @haci's response answer your question? If so please mark it as "accepted". The question appears to contain very little detail and is easy for a misunderstanding to occur in these situations.
M__
<rna-seq><scrnaseq>
is it possible to count cell in Violin plot in seurat?
# is it possible to count cell in Violin plot in seurat?

(Asked by: username_0 on 2023-07-06)

[![enter image description here](https://i.sstatic.net/2W5L6.png)](https://i.sstatic.net/2W5L6.png)

I tried to quantify the number of cells of Fzd9+ Macrophage.

how can I know the cell count?

thank you

**Tags:** rna-seq, scrnaseq
> **Comments:**
> **username_1**: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.  
> **username_2**: Does @haci's response answer your question? If so please mark it as "accepted". The question appears to contain very little detail and is easy for a misunderstanding to occur in these situations.  

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## 1 answers

### Answer by username_3 on 2023-07-06. Score: 3

This can be a good starting point: `table(your_seurat_object@meta.data$the_column_that_has_the_labels_of_interest)`

Basically you will be counting the number of rows (each single cell is a row) in the `meta.data` slot of your Seurat object for each level of your column of interest (for example cell type annotations).


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