<p><a href="https://phytozome.jgi.doe.gov/phytomine/begin.do" rel="nofollow noreferrer">PhytoMine</a> is an InterMine interface to data from Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, which hosts 81 assembled and annotation genomes, from 78 viridiplantae species.</p>

CC BY-SA 3.0
2018-05-01T23:15:13.657Z
2018-05-01T23:15:13.657Z
Jason Aller
<p>I am searching for a plant metabolome or secondary metabolite database for a college bioinformatics project. Up until now, I have found these two databases, as I am giving their links below;</p>

<ul>
<li><a href="http://scbt.sastra.edu/pmdb/" rel="nofollow noreferrer">http://scbt.sastra.edu/pmdb/</a></li>
<li><a href="https://www.plantcyc.org/https://www.plantcyc.org/" rel="nofollow noreferrer">https://www.plantcyc.org/https://www.plantcyc.org/</a></li>
</ul>

<p>and searched for different scientific articles and reviews;</p>

<ul>
<li><a href="https://www.frontiersin.org/articles/10.3389/fpls.2013.00073/full" rel="nofollow noreferrer">https://www.frontiersin.org/articles/10.3389/fpls.2013.00073/full</a></li>
<li><a href="https://www.ncbi.nlm.nih.gov/pubmed/27258266" rel="nofollow noreferrer">https://www.ncbi.nlm.nih.gov/pubmed/27258266</a></li>
</ul>

<p>But only one and updated database which could contain all known plants and all of their known metabolites would be perfect. Could you suggest me any database or any other source with a high coverage for my project?</p>

CC BY-SA 3.0
2018-04-25T07:47:40.257Z
Can you use the plant reactome db? http://plantreactome.gramene.org/
benn
CC BY-SA 3.0
2018-04-25T09:22:56.820Z
Do you really need to be all plants, and all metabolites? We don't have even for humans all the metabolites! Let alone know all plants, and from all have all the metabolites. Welcome to the site! Nice first question
llrs
CC BY-SA 3.0
2018-04-25T19:10:33.410Z
Thank you for your suggestion @b.nota, I will check the db you shared :)
niraito
CC BY-SA 3.0
2018-04-25T19:10:48.460Z
Thank you for your feedback @Llopis, I have meant all "known" plants and metabolites, could you recommend me any db with a coverage as high as possible?
niraito
<database><public-databases>
A Database for Plant Metabolome or Secondary Metabolites?
# A Database for Plant Metabolome or Secondary Metabolites?

(Asked by: username_0 on 2018-04-25)

I am searching for a plant metabolome or secondary metabolite database for a college bioinformatics project. Up until now, I have found these two databases, as I am giving their links below;

* <http://scbt.sastra.edu/pmdb/>
* <https://www.plantcyc.org/https://www.plantcyc.org/>

and searched for different scientific articles and reviews;

* <https://www.frontiersin.org/articles/10.3389/fpls.2013.00073/full>
* <https://www.ncbi.nlm.nih.gov/pubmed/27258266>

But only one and updated database which could contain all known plants and all of their known metabolites would be perfect. Could you suggest me any database or any other source with a high coverage for my project?

**Tags:** database, public-databases
> **Comments:**
> **username_1**: Can you use the plant reactome db? http://plantreactome.gramene.org/  
> **username_2**: Do you really need to be all plants, and all metabolites? We don't have even for humans all the metabolites! Let alone know all plants, and from all have all the metabolites. Welcome to the site! Nice first question  
> **username_0**: Thank you for your suggestion @b.nota, I will check the db you shared :)  
> **username_0**: Thank you for your feedback @Llopis, I have meant all "known" plants and metabolites, could you recommend me any db with a coverage as high as possible?  

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## 1 answers

### Answer by username_3 on 2018-05-01. Score: 3

[PhytoMine](https://phytozome.jgi.doe.gov/phytomine/begin.do) is an InterMine interface to data from Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, which hosts 81 assembled and annotation genomes, from 78 viridiplantae species.


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