<p>older releases of PDB used to specify DSSP as the 2ary structure assignment algorithm used in PDB, right now no algorithm is explicitly stated. Where can I find a reference for it in the database?</p>

CC BY-SA 4.0
2023-03-11T16:20:41.370Z
Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.
Community
CC BY-SA 4.0
2023-03-19T21:37:54.043Z
Does the PDB assign the secondary structure tags, or just validate the one uploaded in the repository ??
pippo1980
CC BY-SA 4.0
2023-03-19T21:51:00.880Z
DSSP 4.0 ?? https://github.com/PDB-REDO/dssp is used in PDB-redo
pippo1980
CC BY-SA 4.0
2023-03-19T21:51:19.800Z
cant find any reference tough
pippo1980
<pdb><secondary-structure>
which secondary structure assignment algorithm is used by PDB?
# which secondary structure assignment algorithm is used by PDB?

(Asked by: username_0 on 2023-03-11)

older releases of PDB used to specify DSSP as the 2ary structure assignment algorithm used in PDB, right now no algorithm is explicitly stated. Where can I find a reference for it in the database?

**Tags:** pdb, secondary-structure
> **Comments:**
> **username_1**: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.  
> **username_2**: Does the PDB assign the secondary structure tags, or just validate the one uploaded in the repository ??  
> **username_2**: DSSP 4.0 ?? https://github.com/PDB-REDO/dssp is used in PDB-redo  
> **username_2**: cant find any reference tough  

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## 0 answers

