<p>EBI has an expression atlas, including mouse: <a href="https://www.ebi.ac.uk/gxa/experiments?species=mus+musculus" rel="nofollow noreferrer">https://www.ebi.ac.uk/gxa/experiments?species=mus+musculus</a></p>

<p>If you click on one of the individual experiments you can download tables of TPM or RPKM per gene.</p>

<p>There are currently about 1000 individual experiments in different tissues etc.</p>

CC BY-SA 4.0
2019-02-08T11:39:47.863Z
2019-02-08T11:39:47.863Z
Jay Moore
<p>Is there any RNAseq gene/transcript read count database for the mouse? I already know about <a href="https://amp.pharm.mssm.edu/archs4/" rel="nofollow noreferrer">ARCHS4</a>, looking for some other source.</p>

<p>Thank you</p>

CC BY-SA 4.0
2019-02-07T20:03:36.260Z
You can sometimes get counts from GEO, though that's probably not what you're looking for.
Devon Ryan
<rna-seq><reads><data-mining>
RNA-seq gene/transcript read counts database for Mouse
# RNA-seq gene/transcript read counts database for Mouse

(Asked by: username_0 on 2019-02-07)

Is there any RNAseq gene/transcript read count database for the mouse? I already know about [ARCHS4](https://amp.pharm.mssm.edu/archs4/), looking for some other source.

Thank you

**Tags:** rna-seq, reads, data-mining
> **Comments:**
> **username_1**: You can sometimes get counts from GEO, though that's probably not what you're looking for.  

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## 1 answers

### Answer by username_2 on 2019-02-08. Score: 2 | Accepted answer

EBI has an expression atlas, including mouse: <https://www.ebi.ac.uk/gxa/experiments?species=mus+musculus>

If you click on one of the individual experiments you can download tables of TPM or RPKM per gene.

There are currently about 1000 individual experiments in different tissues etc.


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