<p>I am not sure if there are preprocessed datasets available, however, <a href="https://www.kallistobus.tools/velocity_tutorial.html" rel="nofollow noreferrer">Kallisto + Bustools</a> was designed specifically for the rapid quantification of spliced and unspliced transcripts. </p>

CC BY-SA 4.0
2020-01-14T19:51:46.543Z
I hear there's an even easier pipeline/container in the works that automates Kallisto + Bustools
zdebruine
CC BY-SA 4.0
2020-01-14T03:45:55.333Z
2020-01-14T03:45:55.333Z
GWW
<p>Before I do this myself...</p>

<p>Is there any compiled batch-corrected dataset of the major scRNA-seq atlases (Mouse Cell Atlas, Mouse Organogenesis Atlas, Mouse Gastrulation Atlas, Tabula Muris, Tabula Muris Senis, etc.) with processed spliced AND unspliced count matrices?</p>

<p>I would be surprised if there is, but in the event there isn't, are there new pipelines in development that will make processing of raw data easier for studying RNA velocity?</p>

<r><python><scrnaseq>
Processed spliced and unspliced count matrices for existing scRNA-seq atlases
# Processed spliced and unspliced count matrices for existing scRNA-seq atlases

(Asked by: username_0 on 2020-01-13)

Before I do this myself...

Is there any compiled batch-corrected dataset of the major scRNA-seq atlases (Mouse Cell Atlas, Mouse Organogenesis Atlas, Mouse Gastrulation Atlas, Tabula Muris, Tabula Muris Senis, etc.) with processed spliced AND unspliced count matrices?

I would be surprised if there is, but in the event there isn't, are there new pipelines in development that will make processing of raw data easier for studying RNA velocity?

**Tags:** r, python, scrnaseq

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## 1 answers

### Answer by username_1 on 2020-01-14. Score: 1 | Accepted answer

I am not sure if there are preprocessed datasets available, however, [Kallisto + Bustools](https://www.kallistobus.tools/velocity_tutorial.html) was designed specifically for the rapid quantification of spliced and unspliced transcripts.

> **Comments:**
> **username_0**: I hear there's an even easier pipeline/container in the works that automates Kallisto + Bustools  

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