<p>I've recently downloaded the FastqCLeaner to process paired-end fastq files locally using R (4.0.3). I'm having trouble with the shiny app. It is not uploading my second fastq file, and is repeated asking for file 1. Can someone help me? is there another package i can use for trimming and alignment in R? I've tried GREP2 but had massive installation issues, i wasted 2 days trying to install in R.</p>

CC BY-SA 4.0
2020-12-23T16:19:45.473Z
Ditch R, it's not the proper environment for handling reads. R is for statistical analysis and plots and absolutely nothing else.
Devon Ryan
<r><trimming><fastqc>
FastqCleaner in R, not recognizing paired-end fastq file?
# FastqCleaner in R, not recognizing paired-end fastq file?

(Asked by: username_0 on 2020-12-23)

I've recently downloaded the FastqCLeaner to process paired-end fastq files locally using R (4.0.3). I'm having trouble with the shiny app. It is not uploading my second fastq file, and is repeated asking for file 1. Can someone help me? is there another package i can use for trimming and alignment in R? I've tried GREP2 but had massive installation issues, i wasted 2 days trying to install in R.

**Tags:** r, trimming, fastqc
> **Comments:**
> **username_1**: Ditch R, it's not the proper environment for handling reads. R is for statistical analysis and plots and absolutely nothing else.  

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## 0 answers

