<p>The command <code>create_pan_genome_plots</code> from <a href="http://sanger-pathogens.github.io/Roary/" rel="nofollow noreferrer">Roary</a> can create a plot like this:
<a href="https://i.sstatic.net/L3X7S.png" rel="nofollow noreferrer"><img src="https://i.sstatic.net/L3X7S.png" alt="enter image description here" /></a></p>

CC BY-SA 4.0
2022-06-16T11:15:43.470Z
2022-06-16T11:15:43.470Z
Forrest Vigor
<p>I´m working with a dataset of 566 genomes to analyze a pangenome. So I was working with PANWEB to create this pan core genome curve, however, there is too much sequence to work with this webserver. Well, specifically I´m looking for this kind of plot:
<a href="https://i.sstatic.net/N0idM.jpg" rel="nofollow noreferrer"><img src="https://i.sstatic.net/N0idM.jpg" alt="enter image description here" /></a></p>
<p>So, I just want to ask for some ideas of programs to do that with a big dataset and with a command line.</p>
<p>Here is the reference: <a href="https://www.researchgate.net/figure/Pan-genome-and-core-genome-Graph-representing-the-pan-genome-blue-and-core-genome_fig1_317390138" rel="nofollow noreferrer">https://www.researchgate.net/figure/Pan-genome-and-core-genome-Graph-representing-the-pan-genome-blue-and-core-genome_fig1_317390138</a></p>

<genome><metagenome>
How to make pan-core genome curve through command line on linux?
# How to make pan-core genome curve through command line on linux?

(Asked by: username_0 on 2022-06-01)

I´m working with a dataset of 566 genomes to analyze a pangenome. So I was working with PANWEB to create this pan core genome curve, however, there is too much sequence to work with this webserver. Well, specifically I´m looking for this kind of plot:
[![enter image description here](https://i.sstatic.net/N0idM.jpg)](https://i.sstatic.net/N0idM.jpg)

So, I just want to ask for some ideas of programs to do that with a big dataset and with a command line.

Here is the reference: <https://www.researchgate.net/figure/Pan-genome-and-core-genome-Graph-representing-the-pan-genome-blue-and-core-genome_fig1_317390138>

**Tags:** genome, metagenome

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## 1 answers

### Answer by username_1 on 2022-06-16. Score: 3 | Accepted answer

The command `create_pan_genome_plots` from [Roary](http://sanger-pathogens.github.io/Roary/) can create a plot like this:
[![enter image description here](https://i.sstatic.net/L3X7S.png)](https://i.sstatic.net/L3X7S.png)


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