<p>OK I found the bug. CIBERSORT seems to require tsv files instead of csv files. Plus it doesn't seem to like empty columns</p>

CC BY-SA 4.0
2019-10-31T10:14:29.747Z
2019-10-31T10:14:29.747Z
Code42
<p>I was running <a href="https://cibersort.stanford.edu" rel="nofollow noreferrer">CIBERSORT</a> web and saw this error:</p>

<pre><code>Exception in thread "Thread-0" java.lang.ArrayIndexOutOfBoundsException: 0
at launch.QN.doQN(QN.java:56)
at launch.Cibersort.Run_CIBERSORT(Cibersort.java:611)
at launch.Cibersort.run_all(Cibersort.java:179)
at launch.Cibersort$runCIBERSORT.run(Cibersort.java:1585)
at java.lang.Thread.run(Thread.java:745)
311
</code></pre>

<p>Does anyone know why?</p>

<webservice><cibersort>
CIBERSORT runtime error
# CIBERSORT runtime error

(Asked by: username_0 on 2019-10-31)

I was running CIBERSORT web and saw this error:
Exception in thread "Thread-0" java.lang.ArrayIndexOutOfBoundsException: 0
at launch.QN.doQN(QN.java:56)
at launch.Cibersort.Run_CIBERSORT(Cibersort.java:611)
at launch.Cibersort.run_all(Cibersort.java:179)
at launch.Cibersort$runCIBERSORT.run(Cibersort.java:1585)
at java.lang.Thread.run(Thread.java:745)
311

Does anyone know why?

**Tags:** webservice, cibersort

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## 1 answers

### Answer by username_0 on 2019-10-31. Score: 1

OK I found the bug. CIBERSORT seems to require tsv files instead of csv files. Plus it doesn't seem to like empty columns


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