<p>is there a dataset online containing a HiC contact matrix and file with TAD boundary locations, which were generated, either by hand or automated, with high accuracy? Although I already used programs such as SpectralTAD or GMAP to generate TADs myself, a dataset which was computed with higher accuracy would be nice to check my project against.</p>
<p>Preferred attributes would be:</p>
<ul>
<li>human genome</li>
<li>whole genome</li>
<li>10 kb resolution or higher</li>
</ul>
<p>Thank you very much in advance!</p>
<p>edit: One dataset I found is <a href="http://chromosome.sdsc.edu/mouse/hi-c/download.html" rel="nofollow noreferrer">http://chromosome.sdsc.edu/mouse/hi-c/download.html</a>, which includes multiple 10 kb datasets with TADs called.</p>

<hi-c><chromosome-capture><domains>
Can anyone point me towards a HiC Dataset with domains of high confidence?
# Can anyone point me towards a HiC Dataset with domains of high confidence?

(Asked by: username_0 on 2020-12-28)

is there a dataset online containing a HiC contact matrix and file with TAD boundary locations, which were generated, either by hand or automated, with high accuracy? Although I already used programs such as SpectralTAD or GMAP to generate TADs myself, a dataset which was computed with higher accuracy would be nice to check my project against.

Preferred attributes would be:

* human genome
* whole genome
* 10 kb resolution or higher

Thank you very much in advance!

edit: One dataset I found is <http://chromosome.sdsc.edu/mouse/hi-c/download.html>, which includes multiple 10 kb datasets with TADs called.

**Tags:** hi-c, chromosome-capture, domains

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## 0 answers

