<p><a href="http://proteowizard.sourceforge.net/" rel="nofollow noreferrer"><code>ProteoWizard</code></a> offers this functionality:</p>

<pre><code>msconvert your_mzXML_file --mzML
</code></pre>

<p><code>FileConverter</code> of <code>OpenMS</code> (I believe using the integrated ProteoWizard) also does <a href="https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/TOPP_FileConverter.html" rel="nofollow noreferrer">this</a>.</p>

CC BY-SA 4.0
2019-11-17T12:14:13.250Z
2019-11-17T12:22:16.613Z
2019-11-17T12:22:16.613Z
haci
<p>How to convert mzXML to mzML format (mass spectrometry files) preferably under Linux and/or Python?</p>

<python><linux>
How to convert mzXML to mzML format (mass spectrometry files)?
# How to convert mzXML to mzML format (mass spectrometry files)?

(Asked by: username_0 on 2019-11-15)

How to convert mzXML to mzML format (mass spectrometry files) preferably under Linux and/or Python?

**Tags:** python, linux

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## 1 answers

### Answer by username_1 on 2019-11-17. Score: 4 | Accepted answer

ProteoWizard offers this functionality:
msconvert your_mzXML_file --mzML

FileConverter of OpenMS (I believe using the integrated ProteoWizard) also does this.


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