<p>Given the fact that it is a simple query, in my opinion, the best approach would be an advanced search on <a href="http://amigo.geneontology.org/amigo/search/annotation" rel="nofollow noreferrer">AmigoGO</a>. There is no need to bother with complex methods like programmatic access APIs, as you basically have only two criteria to meet: organism and cellular localization.
After you specify those, you can download the file using the appropriate button, or mess a bit with the columns that you are interested in.
Once you have the file, you can then manipulate it further to your specific need with any tool of your preference, for example, to retain only proteins of your interest.
Hope this helps.</p>

CC BY-SA 4.0
2021-11-27T12:14:21.117Z
2021-11-27T12:14:21.117Z
saiden
<p>I have a list of <em>A. thaliana</em> proteins and I'd like to know their location in the cell. I've found <a href="https://suba.plantenergy.uwa.edu.au/" rel="nofollow noreferrer">SUBA</a> but they seem not to share their dataset and only allow queries through their website. It's inconvenient for me, because I need to locate 1.6k of proteins and process the results further. Is there a dataset or an API I could use instead?</p>

CC BY-SA 4.0
2021-11-27T22:46:07.027Z
When cross-posting on multiple sites, it is considered polite to include links to the other posts as a courtesy to members (e. g. https://biology.stackexchange.com/questions/105381/where-can-i-get-info-about-a-thaliana-proteins-locations)
Maximilian Press
CC BY-SA 4.0
2021-11-28T19:14:27.520Z
Thanks for the advice, I'll do it next time.
micoay
<proteins><database>
Where can I get info about A. thaliana proteins' locations?
# Where can I get info about A. thaliana proteins' locations?

(Asked by: username_0 on 2021-11-26)

I have a list of *A. thaliana* proteins and I'd like to know their location in the cell. I've found [SUBA](https://suba.plantenergy.uwa.edu.au/) but they seem not to share their dataset and only allow queries through their website. It's inconvenient for me, because I need to locate 1.6k of proteins and process the results further. Is there a dataset or an API I could use instead?

**Tags:** proteins, database
> **Comments:**
> **username_1**: When cross-posting on multiple sites, it is considered polite to include links to the other posts as a courtesy to members (e. g. https://biology.stackexchange.com/questions/105381/where-can-i-get-info-about-a-thaliana-proteins-locations)  
> **username_0**: Thanks for the advice, I'll do it next time.  

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## 1 answers

### Answer by username_2 on 2021-11-27. Score: 1

Given the fact that it is a simple query, in my opinion, the best approach would be an advanced search on [AmigoGO](http://amigo.geneontology.org/amigo/search/annotation). There is no need to bother with complex methods like programmatic access APIs, as you basically have only two criteria to meet: organism and cellular localization.
After you specify those, you can download the file using the appropriate button, or mess a bit with the columns that you are interested in.
Once you have the file, you can then manipulate it further to your specific need with any tool of your preference, for example, to retain only proteins of your interest.
Hope this helps.


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