<p>Does anyone know of a Ramachandran plot server (URL please) that allows you to display, for example, just the leucine residues in a protein structure rather than displaying all the amino acids in the pdb file? Thanks!</p>
<p>Paul</p>

CC BY-SA 4.0
2023-10-01T12:51:26.923Z
Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.
Community
CC BY-SA 4.0
2023-10-02T16:44:42.770Z
https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/ramachandran.html  : Usage: ramachandran [ assign ]  atom-spec
The ramachandran command shows the distribution of peptide φ,ψ angles (a Ramachandran plot) for each specified model that contains protein. It is the command-line implementation of the Ramachandran plot function in the Model Panel. A separate plot will be generated for each protein-containing model with any atom in atom-spec, and the plot for a model will contain all of its peptide φ,ψ angles regardless of which atoms were specified.
pippo1980
<pdb>
Ramachandran Plot for specific amino acids in a pdb file
# Ramachandran Plot for specific amino acids in a pdb file

(Asked by: username_0 on 2023-10-01)

Does anyone know of a Ramachandran plot server (URL please) that allows you to display, for example, just the leucine residues in a protein structure rather than displaying all the amino acids in the pdb file? Thanks!

Paul

**Tags:** pdb
> **Comments:**
> **username_1**: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.  
> **username_2**: https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/ramachandran.html  : Usage: ramachandran [ assign ]  atom-spec The ramachandran command shows the distribution of peptide φ,ψ angles (a Ramachandran plot) for each specified model that contains protein. It is the command-line implementation of the Ramachandran plot function in the Model Panel. A separate plot will be generated for each protein-containing model with any atom in atom-spec, and the plot for a model will contain all of its peptide φ,ψ angles regardless of which atoms were specified.  

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## 0 answers

