<p>you should not move nextflow within <code>~/master_of_pores/NanoPreProcess/bin</code> .
Just add nextflow in your path.</p>
<pre><code>export PATH=$PATH:where_is_your_nf_executable
</code></pre>
<p>Feel free to open an issue on github if you need more help.</p>

CC BY-SA 4.0
2020-08-19T10:48:30.693Z
2020-08-19T15:59:28.483Z
2020-08-19T15:59:28.483Z
Luca Cozzuto
<p>I'm bit of a newbie with ONT analyses and am having some trouble with the Master Of Pores installation instructions (<a href="https://biocorecrg.github.io/master_of_pores/install.html" rel="nofollow noreferrer">https://biocorecrg.github.io/master_of_pores/install.html</a>). I've managed to install nextflow, cloned the repository and have downloaded albacore and guppy. But when I run the pipeline below, i get an error saying
nextflow: command not found. Any help would be most appreciated.</p>
<pre><code>curl https://get.nextflow.io | bash
mv nextflow ~/master_of_pores/NanoPreProcess/bin
nextflow run nanopreprocess.nf
</code></pre>

<nanopore><software-installation><nextflow>
Master of Pores Installation Mac OS Mojave 10.14
# Master of Pores Installation Mac OS Mojave 10.14

(Asked by: username_0 on 2020-08-18)

I'm bit of a newbie with ONT analyses and am having some trouble with the Master Of Pores installation instructions (https://biocorecrg.github.io/master_of_pores/install.html). I've managed to install nextflow, cloned the repository and have downloaded albacore and guppy. But when I run the pipeline below, i get an error saying
nextflow: command not found. Any help would be most appreciated.
curl https://get.nextflow.io | bash
mv nextflow ~/master_of_pores/NanoPreProcess/bin
nextflow run nanopreprocess.nf

**Tags:** nanopore, software-installation, nextflow

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## 1 answers

### Answer by username_1 on 2020-08-19. Score: 3

you should not move nextflow within ~/master_of_pores/NanoPreProcess/bin .
Just add nextflow in your path.
export PATH=$PATH:where_is_your_nf_executable

Feel free to open an issue on github if you need more help.


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