<p>I want to use the single-cell data from the following expression profiling which concerns the RNA-seq of metastatic melanoma:
<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72056" rel="nofollow noreferrer">https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72056</a></p>
<p>The data was also analyzed here,
<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4944528/" rel="nofollow noreferrer">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4944528/</a></p>
<p>However I cannot find the mapping between patient and single-cell samples anywhere, neither in the paper nor in the supplementary materials. Anybody has an experience with this data?</p>
<p>Note that in the Supp1 (<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4944528/bin/NIHMS791837-supplement-Supp1.doc" rel="nofollow noreferrer">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4944528/bin/NIHMS791837-supplement-Supp1.doc</a>) from the paper, at Table S1 (almost at the end of the file) that represents the mapping between tumor and patient, which is a one-to-one mapping. But no mapping between samples and tumors found.</p>

CC BY-SA 4.0
2019-08-27T13:29:28.257Z
No answer yet?!
hadi
CC BY-SA 4.0
2019-08-27T19:51:17.097Z
If there is no answer, it is likely because no one has found an answer. Clearly you have had some trouble with this, perhaps it is a difficult question to answer.
d_kennetz
CC BY-SA 4.0
2019-08-29T12:53:00.687Z
Hey i briefly checked the publication. It is really hard to make a connection between the sequenced sample names and actual sample name. What I usually do is to write to the authors directly..
StupidWolf
CC BY-SA 4.0
2019-08-30T13:03:24.337Z
OK Thanks. I will go for it.
hadi
<rna-seq><read-mapping><cancer>
Patient-sample mapping in GSE72056 dataset
# Patient-sample mapping in GSE72056 dataset

(Asked by: username_0 on 2019-08-23)

I want to use the single-cell data from the following expression profiling which concerns the RNA-seq of metastatic melanoma:
<https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72056>

The data was also analyzed here,
<https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4944528/>

However I cannot find the mapping between patient and single-cell samples anywhere, neither in the paper nor in the supplementary materials. Anybody has an experience with this data?

Note that in the Supp1 (<https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4944528/bin/NIHMS791837-supplement-Supp1.doc>) from the paper, at Table S1 (almost at the end of the file) that represents the mapping between tumor and patient, which is a one-to-one mapping. But no mapping between samples and tumors found.

**Tags:** rna-seq, read-mapping, cancer
> **Comments:**
> **username_0**: No answer yet?!  
> **username_1**: If there is no answer, it is likely because no one has found an answer. Clearly you have had some trouble with this, perhaps it is a difficult question to answer.  
> **username_2**: Hey i briefly checked the publication. It is really hard to make a connection between the sequenced sample names and actual sample name. What I usually do is to write to the authors directly..  
> **username_0**: OK Thanks. I will go for it.  

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## 0 answers

