<p>How can I convert protein distance maps and sequences to pdb files?</p>
<p>For the same problem, in the case of a model predicting the structure of a protein, such as AlphaFold, how do we convert the generated output tensor to a PDB file and visualize it?</p>

CC BY-SA 4.0
2022-03-07T16:21:50.800Z
Please edit the question to limit it to a specific problem with enough detail to identify an adequate answer.
Community
CC BY-SA 4.0
2022-03-07T19:59:03.573Z
It would be helpful to see what your outputs look like now. PDB files are supposedly provided as part of alphafold predictions (see github page: https://github.com/deepmind/alphafold#alphafold-output). PDB format described here: https://en.wikipedia.org/wiki/Protein_Data_Bank_(file_format)
Maximilian Press
<proteins><pdb><machine-learning><deep-learning>
How can I convert protein distance maps and sequences to a pdb files?
# How can I convert protein distance maps and sequences to a pdb files?

(Asked by: username_0 on 2022-03-07)

How can I convert protein distance maps and sequences to pdb files?

For the same problem, in the case of a model predicting the structure of a protein, such as AlphaFold, how do we convert the generated output tensor to a PDB file and visualize it?

**Tags:** proteins, pdb, machine-learning, deep-learning
> **Comments:**
> **username_1**: Please edit the question to limit it to a specific problem with enough detail to identify an adequate answer.  
> **username_2**: It would be helpful to see what your outputs look like now. PDB files are supposedly provided as part of alphafold predictions (see github page: https://github.com/deepmind/alphafold#alphafold-output). PDB format described here: https://en.wikipedia.org/wiki/Protein_Data_Bank_(file_format)  

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## 0 answers

