<p>How about:</p>
<ul>
<li><p>dbGaP - <a href="https://www.ncbi.nlm.nih.gov/gap/" rel="nofollow noreferrer">https://www.ncbi.nlm.nih.gov/gap/</a> - in case you are searching for supporting datasets I leave its entry in <a href="http://biokeanos.com/source/Database%20of%20Genotypes%20and%20Phenotypes" rel="nofollow noreferrer">BiŌkeanós</a></p>
</li>
<li><p><a href="https://www.ddbj.nig.ac.jp/jga/" rel="nofollow noreferrer">https://www.ddbj.nig.ac.jp/jga/</a> - the access might be a bit more complicated.</p>
</li>
<li><p><a href="https://www.internationalgenome.org" rel="nofollow noreferrer">https://www.internationalgenome.org</a>, not particularly large, in their FAQ they state that the individuals sequenced have not self-reported any diseases - perhaps you might want to add those with to your negative set.  Again, its entry in <a href="https://biokeanos.com/source/The%20International%20Genome%20Sample%20Resource" rel="nofollow noreferrer">BiŌkeanós</a>.</p>
</li>
</ul>
<p>If you are looking for more comprehensive information, you could try biobanks - e.g. <a href="https://www.ukbiobank.ac.uk" rel="nofollow noreferrer">https://www.ukbiobank.ac.uk</a>. These are usually open (or reasonably priced) for research but the approval process can take time.</p>
<p>A side note - some of GWAS catalogues will have a link to the study where the association originated from, <a href="https://www.ebi.ac.uk/gwas/studies/GCST005312" rel="nofollow noreferrer">e.g. here</a>. You can sometimes find the datasource there.</p>

CC BY-SA 4.0
2021-02-17T19:21:06.097Z
2021-02-17T19:58:09.810Z
2021-02-17T19:58:09.810Z
ellimilial
<br>
I'm a master's student working on genomic prediction of complex traits using deep learning.
i'm looking for a dataset of human genotypes and phenotypes that has been used for a GWAS. 
The only thing i can get from the gwas i found is the summary statistics not the raw data. <br>
Does anyone know if it's possible to get such data (for free ) for a research project? 
<br>
Thanks.

<genomics><gwas><deep-learning>
how to get access to genotypes and phenotypes used for a GWAS
# how to get access to genotypes and phenotypes used for a GWAS

(Asked by: username_0 on 2021-02-17)

I'm a master's student working on genomic prediction of complex traits using deep learning.
i'm looking for a dataset of human genotypes and phenotypes that has been used for a GWAS.
The only thing i can get from the gwas i found is the summary statistics not the raw data.   
Does anyone know if it's possible to get such data (for free ) for a research project?
  
Thanks.

**Tags:** genomics, gwas, deep-learning

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## 1 answers

### Answer by username_1 on 2021-02-17. Score: 0 | Accepted answer

How about:

* dbGaP - <https://www.ncbi.nlm.nih.gov/gap/> - in case you are searching for supporting datasets I leave its entry in [BiŌkeanós](http://biokeanos.com/source/Database%20of%20Genotypes%20and%20Phenotypes)
* <https://www.ddbj.nig.ac.jp/jga/> - the access might be a bit more complicated.
* <https://www.internationalgenome.org>, not particularly large, in their FAQ they state that the individuals sequenced have not self-reported any diseases - perhaps you might want to add those with to your negative set. Again, its entry in [BiŌkeanós](https://biokeanos.com/source/The%20International%20Genome%20Sample%20Resource).

If you are looking for more comprehensive information, you could try biobanks - e.g. <https://www.ukbiobank.ac.uk>. These are usually open (or reasonably priced) for research but the approval process can take time.

A side note - some of GWAS catalogues will have a link to the study where the association originated from, [e.g. here](https://www.ebi.ac.uk/gwas/studies/GCST005312). You can sometimes find the datasource there.


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