<p>Install it via anaconda/conda either,</p>
<pre><code>conda install -c bioconda vcf2maf
conda install -c bioconda/label/cf201901 vcf2maf
</code></pre>
<p>I would be surprised if that installation fails. A possible issue is Perl version and system version.</p>

CC BY-SA 4.0
2022-02-14T20:34:35.380Z
Thanks! I think that works!
Scott XU
CC BY-SA 4.0
2022-02-14T20:46:39.437Z
Cool, please remember to 'accept' and if possible upvote
M__
CC BY-SA 4.0
2022-02-14T20:31:07.340Z
2022-02-14T20:31:07.340Z
M__
<p>I tried to install <code>vcf2maf</code> following this tutorial from GitHub: <a href="https://github.com/mskcc/vcf2maf" rel="nofollow noreferrer">https://github.com/mskcc/vcf2maf</a>.</p>
<p>I get a repeat error when I try to test out vcf2maf using the code:</p>
<pre><code>perl vcf2maf.pl --input-vcf tests/test.vcf --output-maf tests/test.vep.maf
</code></pre>
<p>The error message looks like this:</p>
<pre><code>'''STATUS: Running VEP and writing to: tests/test.vep.vcf
ERROR: Cannot find VEP script under: /Users/user/miniconda3/bin'''
</code></pre>
<p>Basically I followed every steps provided on the tutorial.
Does anyone could help me find out what is going wrong?</p>
<p>I am working on macOS Monterey 12.2.1 with an Intel Core i5 processor.</p>

CC BY-SA 4.0
2022-02-14T20:28:25.017Z
Could you kindly provide details of your hardware and system?
M__
CC BY-SA 4.0
2022-06-09T02:06:30.207Z
I have the same problem.
I tried conda installation as indicated, however, the error is not solved.
Perl version is v5.36.0.
user15601
<vcf><maf>
Error in installing vcf2maf
# Error in installing vcf2maf

(Asked by: username_0 on 2022-02-14)

I tried to install vcf2maf following this tutorial from GitHub: https://github.com/mskcc/vcf2maf.
I get a repeat error when I try to test out vcf2maf using the code:
perl vcf2maf.pl --input-vcf tests/test.vcf --output-maf tests/test.vep.maf

The error message looks like this:
'''STATUS: Running VEP and writing to: tests/test.vep.vcf
ERROR: Cannot find VEP script under: /Users/user/miniconda3/bin'''

Basically I followed every steps provided on the tutorial.
Does anyone could help me find out what is going wrong?
I am working on macOS Monterey 12.2.1 with an Intel Core i5 processor.

**Tags:** vcf, maf
> **Comments:**
> **username_1**: Could you kindly provide details of your hardware and system?  
> **username_2**: I have the same problem. I tried conda installation as indicated, however, the error is not solved. Perl version is v5.36.0.  

---

## 1 answers

### Answer by username_1 on 2022-02-14. Score: 1 | Accepted answer

Install it via anaconda/conda either,
conda install -c bioconda vcf2maf
conda install -c bioconda/label/cf201901 vcf2maf

I would be surprised if that installation fails. A possible issue is Perl version and system version.

> **Comments:**
> **username_0**: Thanks! I think that works!  
> **username_1**: Cool, please remember to 'accept' and if possible upvote  

---

