function setOptions(options) {
	
	// Pull out axis options and apply them to the respective default axis options 
	/*defaultXAxisOptions = merge(defaultXAxisOptions, options.xAxis);
	defaultYAxisOptions = merge(defaultYAxisOptions, options.yAxis);
	options.xAxis = options.yAxis = UNDEFINED;*/
	
	// Merge in the default options
	defaultOptions = merge(defaultOptions, options);
	
	// Apply UTC
	setTimeMethods();

	return defaultOptions;
}
Merge the default options with custom options and return the new options structure
@param {Object} options The new custom options