Diversity of Bacterial Communities Along a Petroleum Contamination Gradient in Desert Soils
Raeid M M Abed, Sumaiya Al-Kindi, Samiha Al-Kharusi
Microbial communities in oil-polluted desert soils have been rarely studied compared to their counterparts from freshwater and marine environments. We investigated bacterial diversity and changes therein in five desert soils exposed to different levels of oil pollution. Automated rRNA intergenic spacer (ARISA) analysis profiles showed that the bacterial communities of the five soils were profoundly different (analysis of similarities (ANOSIM), R = 0.45, P <0.0001) and shared less than 20 % of their operational taxonomic units (OTUs). OTU richness was relatively higher in the soils with the higher oil pollution levels. Multivariate analyses of ARISA profiles revealed that the microbial communities in the S soil, which contains the highest level of contamination, were different from the other soils and formed a completely separate cluster. A total of 16,657 ribosomal sequences were obtained, with 42–89 % of these sequences belonging to the phylum Proteobacteria. While sequences belonging to Betaproteobacteria, Gammaproteobacteria, Bacilli, and Actinobacteria were encountered in all soils, sequences belonging to anaerobic bacteria from the classes Deltaproteobacteria, Clostridia, and Anaerolineae were only detected in the S soil. Sequences belonging to the genus Terriglobus of the class Acidobacteria were only detected in the B3 soil with the lowest level of contamination. Redundancy analysis (RDA) showed that oil contamination level was the most determinant factor that explained variations in the microbial communities. We conclude that the exposure to different levels of oil contamination exerts a strong selective pressure on bacterial communities and that desert soils are rich in aerobic and anaerobic bacteria that could potentially contribute to the degradation of hydrocarbons.
Microbial Ecology
desert soils
desert soil
bacterial communities
microbial communities
intergenic DNA
microbial community
ribosomal RNA
soil sequences
Petroleum Pollution
delta-Proteobacteria
Acidobacteria
Abed, R. M. M., Al-Kindi, S., & Al-Kharusi, S. (2014). Diversity of Bacterial Communities Along a Petroleum Contamination Gradient in Desert Soils. Microbial Ecology, 69(1), 95-105. https://doi.org/10.1007/s00248-014-0475-5
Diversity of Bacterial Communities Along a Petroleum Contamination Gradient in Desert Soils. / Abed, Raeid M M; Al-Kindi, Sumaiya; Al-Kharusi, Samiha.
In: Microbial Ecology, Vol. 69, No. 1, 2014, p. 95-105.
Abed, RMM, Al-Kindi, S & Al-Kharusi, S 2014, 'Diversity of Bacterial Communities Along a Petroleum Contamination Gradient in Desert Soils', Microbial Ecology, vol. 69, no. 1, pp. 95-105. https://doi.org/10.1007/s00248-014-0475-5
Abed RMM, Al-Kindi S, Al-Kharusi S. Diversity of Bacterial Communities Along a Petroleum Contamination Gradient in Desert Soils. Microbial Ecology. 2014;69(1):95-105. https://doi.org/10.1007/s00248-014-0475-5
Abed, Raeid M M ; Al-Kindi, Sumaiya ; Al-Kharusi, Samiha. / Diversity of Bacterial Communities Along a Petroleum Contamination Gradient in Desert Soils. In: Microbial Ecology. 2014 ; Vol. 69, No. 1. pp. 95-105.
@article{990caacd3ae0482fbd7ba19c896b7d71,
title = "Diversity of Bacterial Communities Along a Petroleum Contamination Gradient in Desert Soils",
abstract = "Microbial communities in oil-polluted desert soils have been rarely studied compared to their counterparts from freshwater and marine environments. We investigated bacterial diversity and changes therein in five desert soils exposed to different levels of oil pollution. Automated rRNA intergenic spacer (ARISA) analysis profiles showed that the bacterial communities of the five soils were profoundly different (analysis of similarities (ANOSIM), R = 0.45, P <0.0001) and shared less than 20 {\%} of their operational taxonomic units (OTUs). OTU richness was relatively higher in the soils with the higher oil pollution levels. Multivariate analyses of ARISA profiles revealed that the microbial communities in the S soil, which contains the highest level of contamination, were different from the other soils and formed a completely separate cluster. A total of 16,657 ribosomal sequences were obtained, with 42–89 {\%} of these sequences belonging to the phylum Proteobacteria. While sequences belonging to Betaproteobacteria, Gammaproteobacteria, Bacilli, and Actinobacteria were encountered in all soils, sequences belonging to anaerobic bacteria from the classes Deltaproteobacteria, Clostridia, and Anaerolineae were only detected in the S soil. Sequences belonging to the genus Terriglobus of the class Acidobacteria were only detected in the B3 soil with the lowest level of contamination. Redundancy analysis (RDA) showed that oil contamination level was the most determinant factor that explained variations in the microbial communities. We conclude that the exposure to different levels of oil contamination exerts a strong selective pressure on bacterial communities and that desert soils are rich in aerobic and anaerobic bacteria that could potentially contribute to the degradation of hydrocarbons.",
author = "Abed, {Raeid M M} and Sumaiya Al-Kindi and Samiha Al-Kharusi",
journal = "Microbial Ecology",
T1 - Diversity of Bacterial Communities Along a Petroleum Contamination Gradient in Desert Soils
AU - Abed, Raeid M M
AU - Al-Kindi, Sumaiya
AU - Al-Kharusi, Samiha
N2 - Microbial communities in oil-polluted desert soils have been rarely studied compared to their counterparts from freshwater and marine environments. We investigated bacterial diversity and changes therein in five desert soils exposed to different levels of oil pollution. Automated rRNA intergenic spacer (ARISA) analysis profiles showed that the bacterial communities of the five soils were profoundly different (analysis of similarities (ANOSIM), R = 0.45, P <0.0001) and shared less than 20 % of their operational taxonomic units (OTUs). OTU richness was relatively higher in the soils with the higher oil pollution levels. Multivariate analyses of ARISA profiles revealed that the microbial communities in the S soil, which contains the highest level of contamination, were different from the other soils and formed a completely separate cluster. A total of 16,657 ribosomal sequences were obtained, with 42–89 % of these sequences belonging to the phylum Proteobacteria. While sequences belonging to Betaproteobacteria, Gammaproteobacteria, Bacilli, and Actinobacteria were encountered in all soils, sequences belonging to anaerobic bacteria from the classes Deltaproteobacteria, Clostridia, and Anaerolineae were only detected in the S soil. Sequences belonging to the genus Terriglobus of the class Acidobacteria were only detected in the B3 soil with the lowest level of contamination. Redundancy analysis (RDA) showed that oil contamination level was the most determinant factor that explained variations in the microbial communities. We conclude that the exposure to different levels of oil contamination exerts a strong selective pressure on bacterial communities and that desert soils are rich in aerobic and anaerobic bacteria that could potentially contribute to the degradation of hydrocarbons.
AB - Microbial communities in oil-polluted desert soils have been rarely studied compared to their counterparts from freshwater and marine environments. We investigated bacterial diversity and changes therein in five desert soils exposed to different levels of oil pollution. Automated rRNA intergenic spacer (ARISA) analysis profiles showed that the bacterial communities of the five soils were profoundly different (analysis of similarities (ANOSIM), R = 0.45, P <0.0001) and shared less than 20 % of their operational taxonomic units (OTUs). OTU richness was relatively higher in the soils with the higher oil pollution levels. Multivariate analyses of ARISA profiles revealed that the microbial communities in the S soil, which contains the highest level of contamination, were different from the other soils and formed a completely separate cluster. A total of 16,657 ribosomal sequences were obtained, with 42–89 % of these sequences belonging to the phylum Proteobacteria. While sequences belonging to Betaproteobacteria, Gammaproteobacteria, Bacilli, and Actinobacteria were encountered in all soils, sequences belonging to anaerobic bacteria from the classes Deltaproteobacteria, Clostridia, and Anaerolineae were only detected in the S soil. Sequences belonging to the genus Terriglobus of the class Acidobacteria were only detected in the B3 soil with the lowest level of contamination. Redundancy analysis (RDA) showed that oil contamination level was the most determinant factor that explained variations in the microbial communities. We conclude that the exposure to different levels of oil contamination exerts a strong selective pressure on bacterial communities and that desert soils are rich in aerobic and anaerobic bacteria that could potentially contribute to the degradation of hydrocarbons.
JO - Microbial Ecology
JF - Microbial Ecology