Torah in the Observatory: Maimonides, Gersonides, Song of Songs (Brighton: Academic Studies Press, 2010).
Science in the Bet Midrash: Studies in Maimonides (Brighton: Academic Studies Press, 2009).
Maimonides on the Decline of the Generations and the Nature of Rabbinic Authority(Albany: SUNY Press, 1996).
Maimonides on Judaism and the Jewish People (Albany: SUNY Press, 1991).
Maimonides on Human Perfection, Brown Judaic Studies Series (Atlanta: Scholars Press, 1990).
Dogma in Medieval Jewish Thought (Oxford: Oxford University Press, 1986). Paperback edition printed in 2004.
Gersonides, Commentary on Song of Songs (Ramat Gan: Bar-Ilan University, 2001).
Menachem Kellner, and Charles Manekin, eds., Human Freedom and Moral Responsibility: General and Jewish Perspectives (College Park: University of Maryland Press, 1997).
The Pursuit of the Ideal: Jewish Writings of Steven Schwarzschild (Albany: SUNY Press, 1990).
Contemporary Jewish Ethics (New York: Sanhedrin Press, 1978). Second printing in 1985.
"'The Voice is the Voice of Jacob, but the Hands are the Hands of Esau': Isaac Abravanel between Judah Halevi and Moses Maimonides," Jewish History(forthcoming).
"From Moses to Moses," Rambam Maimonides [Open Access] Medical Journal 1 (2010), pp. 1-5.
"Maimonides' 'True Religion' – for Jews, or All Humanity?" Me'orot [Edah Journal] 7 (1) (2008).
"A Selected Bibliography of Studies on Maimonides, 1991-," Jewish History 18 (2004), pp. 243-289.
"Maimonides on the Nature of Ritual Purity and Impurity," Da'at 50-52 (2003), pp. 1-30.
"Bibliographia Gersonideana 1992-2002," Aleph 3 (2003), pp. 343-374.
"Is Maimonides' Ideal Person Austerely Rationalist?" American Catholic Philosophical Quarterly 76 (2002), pp. 125-143.
"Was Maimonides Truly Universalist?" Trumah: Beitraege zur juedischen Philosophie 11 (Festgabe zum 80. Geburtstag von Ze'ev Levy) (2001), pp. 3-15.
"Strauss' Maimonides vs. Maimonides' Maimonides," Le'ela (Dec, 2000), pp. 29-36.
"Can Orthodoxy Share the Public Square?" Jewish Political Studies Review 11 (1999), pp. 127-143.
"Could Maimonides Get into Rambam's Heaven?" Journal of Jewish Thought and Philosophy 8 (1999), pp. 231-242.
"Maimonides' Allegiances to Torah and Science," Torah U'mada 7 (1997), pp. 88-104.
"Well, Can There Be Jewish Ethics or Not?" Journal of Jewish Thought and Philosophy 5 (1996), pp. 237-241.
"On Universalism and Particularism in Judaism," Da'at 36 (1996), pp. v-xv.
"Gersonides on Imitatio Dei and the Dissemination of Scientific Knowledge," Jewish Quarterly Review 85 (1995), pp. 275-296.
"Isaac Abravanel on Dogma and Faith," Da'at 32-33 (1994), pp. xlvii-lix.
"Politics and Perfection: Gersonides vs. Maimonides," Jewish Political Studies Review 6 (1994), pp. 49-82.
"Gersonides on the Song of Songs and the Nature of Science," Journal of Jewish Thought and Philosophy 4 (1994), pp. 1-21.
"Gersonides on the Role of the Active Intellect in Human Cognition," Hebrew Union College Annual 65 (1994), pp. 233-259.
"Maimonides on the Science of the Mishneh Torah," AJS Review 18 (1993), pp. 169-194.
"Reading Rambam: Approaches to the Interpretation of Maimonides," Jewish History 5 (1991), pp. 73-93.
"Maimonides' Conception of the Ultimate Meaning of Life," Journal of Ultimate Reality and Meaning 14 (1991), pp. 175-184.
"On the Status of the Astronomy and Physics in Maimonides' Mishneh Torah: A Chapter in the History of Science," British Journal for the History of Science 24 (1991), pp. 453-463.
"The Place of Ethics in Medieval Jewish Philosophy," Judaica 5 (Solomon Goldman Essays) (1990), pp. 56-70. Also published in Shofar 9 (1990), pp. 32-47.
"The Conception of the Torah as a Deductive Science in Medieval Jewish Thought,"Revue des Etudes Juives 146 (1987), pp. 265-279. Revised version published as "Joseph Albo's 'Sefer ha-Ikkarim'," Solomon Goldman Lectures, M. Gruber, ed. (1993), vol. 6, pp. 139-149.
"Heresy and the Nature of Faith in Medieval Jewish Philosophy," Jewish Quarterly Review 77 (1987), pp. 299-318. Also published in The Jewish Philosophy Reader, Daniel H. Frank, Oliver Leaman, and Charles Manekin, eds (London: Routledge, 2000).
"Reflections on the Impossibility of Jewish Ethics," Bar-Ilan Annual: Moshe Schwarcz Memorial Volume 22-23 (1987), pp. 45-52.
"Messianic Postures in Israel Today," Modern Judaism 6 (1986), pp. 197-209. Also published in Essential Papers on Messianic Movements in Jewish History, Marc Saperstein, ed. (New York: New York University Press, 1992), pp. 504-519.
"Dogma in Medieval Jewish Thought," Studies in Bibliography and Booklore 15 (1984), pp. 5-21.
"Maimonides' 'Thirteen Principles' and the Structure of the Guide of the Perplexed,"Journal of the History of Philosophy 20 (1982), pp. 76-84.
"Jewish Dogmatics after the Spanish Expulsion," Jewish Quarterly Review 72 (1982), pp. 178-187.
"What is Heresy?" Studies in Jewish Philosophy 3 (1982), pp. 55-70.
"Rabbi Shimon ben Zemah Duran on the Principles of Judaism," Proceedings of the American Academy for Jewish Research 48 (1981), pp. 231-265.
"Gersonides on Miracles, the Messiah and Resurrection," Da'at 4 (1980), pp. 5-34.
"Gersonides on the Problem of Volitional Creation," Hebrew Union College Annual51 (1980), pp. 111-128.
"Jewish Philosophy in the 1980s: Preliminary Comments," Studies in Jewish Philosophy 1 (1980), pp. 10-15.
"Rabbi Levi Ben Gerson: A Bibliographical Essay," Studies in Bibliography and Booklore 12 (1979), pp. 13-23.
"Maimonides, Crescas, and Abravanel on Exodus 20:2," Jewish Quarterly Review69 (1979), pp. 129-157.
"Maimonides and Gersonides on Mosaic Prophecy," Speculum 42 (1977), pp. 62-79.
"Rabbi Isaac Abravanel on the Principles of Judaism," Journal of the American Academy of Religion 45 (1977), pp. 1183-1200.
"Gersonides and His Cultured Despisers," Journal of Medieval and Renaissance Studies 6 (1976), pp. 269-296.
"Democracy and Civil Disobedience," Journal of Politics 37 (1975), pp. 899-911. (This article appeared with a response by Sidney Hook: "In Defense of Terminological Sobriety – A Reply to Professor Kellner").
"Rabbi Isaac Bar Sheshet's Responsum Concerning the Study of Jewish Philosophy," Tradition 15 (1975), pp. 110-118.
"Louis Jacobs' Doctrine of Revelation," Tradition 14 (1974), pp. 143-147.
"Gersonides, Providence, and the Rabbinic Tradition," Journal of the American Academy of Religion 43 (1974), pp. 673-685.