Provides a fast-multiple similar DNA/RNA sequence alignment method. HAlign is a multiple sequence alignment (MSA) application based on the centre star strategy. The goal of this application is ultra-large biological sequences dataset included protein sequences and nucleotide sequences. This package can be used on all platforms and employs center star multiple sequence alignment strategy.
HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing.
HAlign: Fast Multiple Similar DNA/RNA Sequence Alignment Based on the Centre Star Strategy.
The new URL is http://lab.malab.cn/soft/halign/index.html.
Web servers have been developed by the authors.