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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 10 new columns ({'title', 'main_category', 'Article Citation', 'sub_category', 'PMID', 'journal', 'Last Updated (YYYY-MM-DD HH:MM:SS)', 'abstract', 'File', 'License'}) and 13 missing columns ({'nxml_file', 'frame_count', 'aspect_ratio', 'mp4_name', 'file_size', 'caption', 'width', 'data', 'duration', 'height', 'category', 'bitrate', 'fps'}).
This happened while the csv dataset builder was generating data using
hf://datasets/omron-sinicx/PMC-Vid/pmc-vid_paper.csv (at revision f25a938c334b7f2a1b083beafcb68c778d9b9463)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/arrow_writer.py", line 714, in write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
PMC_ID: string
PMID: double
title: string
abstract: string
journal: string
main_category: string
sub_category: string
File: string
Article Citation: string
Last Updated (YYYY-MM-DD HH:MM:SS): string
License: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1596
to
{'PMC_ID': Value('string'), 'mp4_name': Value('string'), 'nxml_file': Value('string'), 'caption': Value('string'), 'category': Value('string'), 'duration': Value('float64'), 'fps': Value('float64'), 'width': Value('int64'), 'height': Value('int64'), 'file_size': Value('int64'), 'frame_count': Value('int64'), 'aspect_ratio': Value('float64'), 'bitrate': Value('float64'), 'data': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1455, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1054, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/builder.py", line 894, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/builder.py", line 970, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/builder.py", line 1702, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 10 new columns ({'title', 'main_category', 'Article Citation', 'sub_category', 'PMID', 'journal', 'Last Updated (YYYY-MM-DD HH:MM:SS)', 'abstract', 'File', 'License'}) and 13 missing columns ({'nxml_file', 'frame_count', 'aspect_ratio', 'mp4_name', 'file_size', 'caption', 'width', 'data', 'duration', 'height', 'category', 'bitrate', 'fps'}).
This happened while the csv dataset builder was generating data using
hf://datasets/omron-sinicx/PMC-Vid/pmc-vid_paper.csv (at revision f25a938c334b7f2a1b083beafcb68c778d9b9463)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
PMC_ID
string | mp4_name
string | nxml_file
string | caption
string | category
string | duration
float64 | fps
float64 | width
int64 | height
int64 | file_size
int64 | frame_count
int64 | aspect_ratio
float64 | bitrate
float64 | data
string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PMC10005782
|
elife-82579-video1.mp4
|
elife-82579.nxml
|
Stills from live imaging of meiosis I in indicated conditions. Microtubules (GFP::TBA-2α-tubulin) in green, chromosomes (mCherry::HIS-11H2B) in magenta. Time in seconds relative to anaphase I onset.
|
Procedure-Live
| 4.5
| 30
| 268
| 470
| 226,347
| 135
| 0.570213
| 400,026
|
train
|
PMC10005773
|
elife-81405-video1-pmcvs_normal.mp4
|
elife-81405.nxml
|
Z-stack image sequences of eosin-stained hagfish epidermis from confocal laser scanning microscopy with transmitted light, taken in en face view. Note a dense layer of epidermal thread cells (ETCs) and large mucous cells at the basal layer of epidermis.
|
Microscopy
| 10.69
| 30
| 400
| 210
| 1,586,617
| 320
| 1.904762
| 1,180,890
|
train
|
PMC10000314
|
mdcvj-19-2-1213-g2-pmcvs_normal.mp4
|
mdcvj-19-2-1213.nxml
|
Three-dimensional transesophageal echocardiography showing atypical left ventricular false tendon.
|
DiagnosticImaging-Other
| 10.82
| 10
| 500
| 360
| 5,025,299
| 108
| 1.388889
| 3,642,996
|
train
|
PMC10005782
|
elife-82579-video3.mp4
|
elife-82579.nxml
|
Stills from live imaging of meiosis I in indicated conditions. Microtubules (GFP::TBA-2α-tubulin) in green, chromosomes (mCherry::HIS-11H2B) in magenta. Time in seconds relative to anaphase I onset.
|
Procedure-Live
| 4.67
| 30
| 268
| 628
| 381,966
| 140
| 0.426752
| 652,476
|
train
|
PMC10005773
|
elife-81405-video6.mp4
|
elife-81405.nxml
|
Scanning electron microscopy (SEM) image of epidermal slime on pin tip, with enlarged areas showing stretched and unstretched threads.
|
Microscopy
| 6.9
| 30
| 350
| 196
| 484,843
| 207
| 1.785714
| 560,235
|
train
|
PMC10000314
|
mdcvj-19-2-1213-g1-pmcvs_normal.mp4
|
mdcvj-19-2-1213.nxml
|
Two-dimensional biplane transesophageal echocardiography, two chamber mid-esophageal view, showing transverse chord-like structure close to mitral valve connecting the papillary muscles.
|
DiagnosticImaging-Other
| 13.42
| 10
| 500
| 360
| 4,675,381
| 134
| 1.388889
| 2,712,964
|
train
|
PMC10005782
|
elife-82579-video2-pmcvs_normal.mp4
|
elife-82579.nxml
|
Live imaging of meiosis I in indicated conditions. Microtubules (GFP::TBA-2α-tubulin) in green, DNA (mCherry::HIS-11H2B) in magenta. Time in seconds relative to anaphase I onset.
|
Procedure-Live
| 3.2
| 30
| 154
| 360
| 1,158,640
| 96
| 0.427778
| 2,892,360
|
train
|
PMC10005782
|
elife-82579-video4-pmcvs_normal.mp4
|
elife-82579.nxml
|
Stills from live imaging of meiosis I and color-coded meiotic defects scored in CLS-2::GFP::HCP-11154-1386, hcp-2Δ worms, in indicated conditions. Time in seconds relative to anaphase I onset.
|
Procedure-Live
| 3.67
| 30
| 206
| 360
| 976,625
| 110
| 0.572222
| 2,126,631
|
train
|
PMC10005773
|
elife-81405-video5-pmcvs_normal.mp4
|
elife-81405.nxml
|
Experimentally induced formation of epidermal slime, demonstrated by scraping wet and blot-dried hagfish skin with a sharp pin head.
|
Experimental-InVivo
| 14.03
| 30
| 320
| 178
| 7,028,741
| 420
| 1.797753
| 4,003,518
|
train
|
PMC10005773
|
elife-81405-video2.mp4
|
elife-81405.nxml
|
Z-stack image sequences of hagfish epidermis from confocal laser scanning microscopy, taken in en face view. Note the outermost epidermis is covered by a layer of small mucous cells, while epidermal thread cells (ETCs) are found at the basal layer.
|
Microscopy
| 86.97
| 30
| 200
| 200
| 1,871,616
| 2,609
| 1
| 171,070
|
train
|
PMC10000314
|
mdcvj-19-2-1213-g3.mp4
|
mdcvj-19-2-1213.nxml
|
Two-dimensional transesophageal echocardiography showing successful MitraClip implantation with residual mitral regurgitation and the tendon remained intact.
|
DiagnosticImaging-Other
| 10.33
| 10
| 1,450
| 1,044
| 5,653,561
| 103
| 1.388889
| 4,257,208
|
train
|
PMC10005773
|
elife-81405-video4-pmcvs_normal.mp4
|
elife-81405.nxml
|
Z-stack image sequences of epidermal thread cells (ETCs) based on confocal laser scanning microscopy showing granules and threads.
|
Microscopy
| 10.69
| 30
| 526
| 350
| 1,815,746
| 320
| 1.502857
| 1,353,512
|
train
|
PMC10005780
|
elife-81532-fig5-video2-pmcvs_normal.mp4
|
elife-81532.nxml
|
Representative time-lapse microscopy video of EGFP-Rab10 (with intensity colour-coded as in Figure 5) after 10 min upon stimulation with 50 ng/mL brain-derived neurotrophic factor (BDNF). A moving Rab10-positive organelle is indicated with a green arrowhead on the left, while in the centre a stationary organelle is indicated with a red arrowhead. The first endosome is moving anterogradely, and when it runs next to the stationary organelle, they partially merge and continue moving. Dimensions and speed are indicated.
|
Microscopy
| 20.61
| 30
| 640
| 360
| 5,981,309
| 618
| 1.777778
| 2,310,735
|
train
|
PMC10005773
|
elife-81405-video3-pmcvs_normal.mp4
|
elife-81405.nxml
|
The release of ETC granules and threads from laceration wounds made with a scalpel.
|
Experimental-InVivo
| 31.57
| 30
| 250
| 250
| 3,759,733
| 947
| 1
| 950,004
|
train
|
PMC10005782
|
elife-82579-video6.mp4
|
elife-82579.nxml
|
Live imaging of meiosis I in hcp-2-mutant worms expressing CLS-2::GFP::HCP-11154-1386 fusion protein in indicated conditions.
|
Procedure-Live
| 4.2
| 30
| 204
| 718
| 233,312
| 126
| 0.284123
| 441,935
|
train
|
PMC10005780
|
elife-81532-fig5-video3-pmcvs_normal.mp4
|
elife-81532.nxml
|
Neuron in mass culture expressing EGFP-Rab10 (with intensity colour-coded as in Figure 5a) at steady state. The video is focused on an area of the cell body at the base of a primary neurite and shows several Rab10-positive tubular structures moving in different directions, labelled with orange arrowheads. Dimensions and speed are indicated.
|
Experimental-InVivo
| 27.29
| 30
| 640
| 360
| 24,714,743
| 818
| 1.777778
| 7,239,707
|
train
|
PMC10005782
|
elife-82579-video5.mp4
|
elife-82579.nxml
|
Movie showing meiotic defects observed upon BHC module perturbation.
|
Experimental-InVitro
| 3.87
| 30
| 268
| 470
| 217,498
| 116
| 0.570213
| 447,405
|
train
|
PMC10005898
|
JCB_202201027_V2.mp4
|
JCB_202201027.nxml
|
CB-5083. Associated with Fig. 3 A. 5 μM CB-5083: U2OS PML−/− + YFP-PMLV cells, monitored by fluorescence microscopy every 15 min for 6.75 h (6.75 fps). 5 z-planes spaced at 2 µm. DeltaVision Elite restoration microscope with incubation chamber set to 37°C and 5% CO2. Green indicates YFP (filter set Ex510/10 nm, Em537/26 nm). Scale bars are 5 μm.
|
Microscopy
| 3.5
| 8
| 476
| 488
| 145,149
| 28
| 0.97541
| 328,857
|
train
|
PMC10005898
|
JCB_202201027_V4.mp4
|
JCB_202201027.nxml
|
No treatment. Associated with Fig. 5 B. Non-targeting SiRNA, no treatment: U2OS PML−/− + YFP-PMLV cells, monitored by fluorescence microscopy every 15 min for 9.75 (9.75 fps). 5 z-planes spaced at 2 µm. DeltaVision Elite restoration microscope with incubation chamber set to 37°C and 5% CO2. Green indicates YFP (filter set Ex510/10 nm, Em537/26 nm). Scale bars are 5 μm.
|
Microscopy
| 3.5
| 8
| 494
| 436
| 232,548
| 28
| 1.133028
| 528,608
|
train
|
PMC10005898
|
JCB_202201027_V5-pmcvs_normal.mp4
|
JCB_202201027.nxml
|
NT + AsO3. Associated with Fig. 5 B. NT SiRNA + 1 μM arsenic: U2OS PML−/− + YFP-PMLV cells, monitored by fluorescence microscopy every 15 min for 9.75 (9.75 fps). 5 z-planes spaced at 2 µm. DeltaVision Elite restoration microscope with incubation chamber set to 37°C and 5% CO2. Green indicates YFP (filter set Ex510/10 nm, Em537/26 nm). Scale bars are 5 μm.
|
Microscopy
| 4
| 10
| 360
| 360
| 978,334
| 40
| 1
| 1,954,660
|
train
|
PMC10005898
|
JCB_202201027_V10-pmcvs_normal.mp4
|
JCB_202201027.nxml
|
AsO3. Associated with Fig. 3 A. 1 μM arsenic: U2OS PML−/− + YFP-PMLV cells, monitored by fluorescence microscopy every 15 min for 6.75 h (6.75 fps). 5 z-planes spaced at 2 µm. DeltaVision Elite restoration microscope with incubation chamber set to 37°C and 5% CO2. Green indicates YFP (filter set Ex510/10 nm, Em537/26 nm). Scale bars are 5 μm.
|
Microscopy
| 4
| 10
| 360
| 360
| 369,292
| 40
| 1
| 736,368
|
train
|
PMC10005898
|
JCB_202201027_V6.mp4
|
JCB_202201027.nxml
|
Sip97+AsO3. Associated with Fig. 5 B. SiRNA to p97 + 1 μM arsenic: U2OS PML−/− + YFP-PMLV cells, monitored by fluorescence microscopy every 15 min for 9.75 (9.75 fps). 5 z-planes spaced at 2 µm. DeltaVision Elite restoration microscope with incubation chamber set to 37°C and 5% CO2. Green indicates YFP (filter set Ex510/10 nm, Em537/26 nm). Scale bars are 5 μm.
|
Microscopy
| 4
| 10
| 476
| 472
| 134,017
| 40
| 1.008475
| 265,174
|
train
|
PMC10005898
|
JCB_202201027_V7.mp4
|
JCB_202201027.nxml
|
SiUFD1+AsO3. Associated with Fig. 5 B. SiRNA to UFD1 + 1 μM arsenic: U2OS PML−/− + YFP-PMLV cells, monitored by fluorescence microscopy every 15 min for 9.75 (9.75 fps). 5 z-planes spaced at 2 µm. DeltaVision Elite restoration microscope with incubation chamber set to 37°C and 5% CO2. Green indicates YFP (filter set Ex510/10 nm, Em537/26 nm). Scale bars are 5 μm.
|
Microscopy
| 4
| 10
| 484
| 498
| 296,581
| 40
| 0.971888
| 590,300
|
train
|
PMC10005898
|
JCB_202201027_V1.mp4
|
JCB_202201027.nxml
|
No treatment. Associated with Fig. 3 A. Untreated cells: U2OS PML−/− + YFP-PMLV cells, monitored by fluorescence microscopy every 15 min for 6.75 h (6.75 fps). 5 z-planes spaced at 2 µm. DeltaVision Elite restoration microscope with incubation chamber set to 37°C and 5% CO2. Green indicates YFP (filter set Ex510/10 nm, Em537/26 nm). Scale bars are 5 μm.
|
Microscopy
| 3.5
| 8
| 480
| 486
| 236,130
| 28
| 0.987654
| 536,813
|
train
|
PMC10005898
|
JCB_202201027_V8-pmcvs_normal.mp4
|
JCB_202201027.nxml
|
SiNPL4+AsO3. Associated with Fig. 5 B. SiRNA to NPL4 + 1 μM arsenic: U2OS PML−/− + YFP-PMLV cells, monitored by fluorescence microscopy every 15 min for 9.75 (9.75 fps). 5 z-planes spaced at 2 µm. DeltaVision Elite restoration microscope with incubation chamber set to 37°C and 5% CO2. Green indicates YFP (filter set Ex510/10 nm, Em537/26 nm). Scale bars are 5 μm.
|
Microscopy
| 4
| 10
| 370
| 360
| 710,711
| 40
| 1.027778
| 1,419,200
|
train
|
PMC10005898
|
JCB_202201027_V3.mp4
|
JCB_202201027.nxml
|
AsO3+CB-5083. Associated with Fig. 3 A. 1 μM arsenic + 5 μM CB-5083: U2OS PML−/− + YFP-PMLV cells, monitored by fluorescence microscopy every 15 min for 6.75 h (6.75 fps). 5 z-planes spaced at 2 µm. DeltaVision Elite restoration microscope with incubation chamber set to 37°C and 5% CO2. Green indicates YFP (filter set Ex510/10 nm, Em537/26 nm). Scale bars are 5 μm.
|
Microscopy
| 3.5
| 8
| 502
| 484
| 305,416
| 28
| 1.03719
| 695,163
|
train
|
PMC10005782
|
elife-82579-video7.mp4
|
elife-82579.nxml
|
TIRF microscopy-mediated live imaging of in vitro microtubule polymerization dynamics from GMPCPP seeds in the presence of indicated protein.
|
Experimental-InVitro
| 13.37
| 30
| 1,280
| 512
| 4,755,705
| 401
| 2.5
| 2,844,826
|
train
|
PMC10005780
|
elife-81532-fig5-video1.mp4
|
elife-81532.nxml
|
Representative axon in mass culture expressing EGFP-Rab10 (with intensity colour-coded as in Figure 5a) before and after being stimulated with 50 ng/mL brain-derived neurotrophic factor (BDNF). Dimensions and speed are indicated in the video.
|
Experimental-InVivo
| 39.37
| 30
| 1,280
| 720
| 5,627,693
| 1,181
| 1.777778
| 1,142,461
|
train
|
PMC10005898
|
JCB_202201027_V9.mp4
|
JCB_202201027.nxml
|
SiUBXN6+AsO3. Associated with Fig. 5 B. SiRNA to UBXN6 + 1 μM arsenic: U2OS PML−/− + YFP-PMLV cells, monitored by fluorescence microscopy every 15 min for 9.75 (9.75 fps). 5 z-planes spaced at 2 µm. DeltaVision Elite restoration microscope with incubation chamber set to 37°C and 5% CO2. Green indicates YFP (filter set Ex510/10 nm, Em537/26 nm). Scale bars are 5 μm.
|
Microscopy
| 4
| 10
| 496
| 490
| 338,957
| 40
| 1.012245
| 675,054
|
train
|
PMC10005851
|
cureus-0015-00000034763-i02.mp4
|
cureus-0015-00000034763.nxml
|
Changes in motor symptoms of the toes and ankle joints after two days of oral pramipexole.
|
Experimental-InVivo
| 30.12
| 30
| 1,280
| 720
| 3,431,027
| 903
| 1.777778
| 779,969
|
train
|
PMC10005851
|
cureus-0015-00000034763-i01.mp4
|
cureus-0015-00000034763.nxml
|
Involuntary movements of the right toes and ankle joint before treatment.
|
Experimental-InVivo
| 28
| 30
| 1,280
| 720
| 3,803,158
| 840
| 1.777778
| 954,869
|
train
|
PMC10006037
|
359_2023_1620_MOESM2_ESM.mp4
|
359_2023_Article_1620.nxml
|
Ecdyonurus larva in flow tank. Frame taken from a video. The black arrow shows the direction of flow. The length of the larva is approximately 9 mm.
|
Experimental-InVivo
| 9.74
| 29.97003
| 960
| 540
| 8,039,857
| 291
| 1.777778
| 6,595,141
|
train
|
PMC10006079
|
41467_2023_36920_MOESM5_ESM.mp4
|
41467_2023_Article_36920.nxml
|
Puncture experiments were performed with different sizes of metal needles on PR-Gel films. With increasing loading stress, obvious umbrella-like puncture deformation was observed.
|
Experimental-InVivo
| 17.76
| 29
| 1,280
| 720
| 2,837,879
| 515
| 1.777778
| 1,219,947
|
train
|
PMC10006170
|
41467_2023_36682_MOESM6_ESM.mp4
|
41467_2023_Article_36682.nxml
|
The postural recovery process was greatly slowed in water containing 0.8% methylcellulose, allowing clearer observation of the body movements during roll tilt.
|
Experimental-InVivo
| 10.05
| 100
| 586
| 820
| 10,506,225
| 1,005
| 0.714634
| 8,062,325
|
train
|
PMC10006170
|
41467_2023_36682_MOESM5_ESM.mp4
|
41467_2023_Article_36682.nxml
|
Fish that had their pectoral fins amputated recovered the upright posture in most trials, indicating that fine postural control in the roll axis is mainly achieved by mechanisms without the pectoral fins.
|
Experimental-InVivo
| 22.1
| 60
| 598
| 878
| 14,416,572
| 1,326
| 0.681093
| 4,903,799
|
train
|
PMC10006170
|
41467_2023_36682_MOESM4_ESM.mp4
|
41467_2023_Article_36682.nxml
|
During a leftward tilt of the chamber, the larva was also tilted in the left-downward direction due to the viscosity of the surrounding water. The fish returned to the original posture within a few seconds.
|
Experimental-InVivo
| 22.14
| 60
| 592
| 866
| 14,793,557
| 1,328
| 0.683603
| 5,028,548
|
train
|
PMC10006170
|
41467_2023_36682_MOESM8_ESM.mp4
|
41467_2023_Article_36682.nxml
|
Behavior of fish with deflated swim bladders during roll tilt, showing that they were unable to recover from the tilted posture, yet continued to perform the vestibular-induced bend reflex (VBR).
|
Experimental-InVivo
| 10.05
| 100
| 568
| 848
| 10,450,183
| 1,005
| 0.669811
| 8,017,536
|
train
|
PMC10006079
|
41467_2023_36920_MOESM4_ESM.mp4
|
41467_2023_Article_36920.nxml
|
The cylindrical sample of PR-Gel was compressed at a strain of 95%, and then quickly returned to its original shape without any damage after the removal of external force, indicating that the PR topological networks significantly improved the compression resistance of the PR-Gel and exhibited exceptional shape recovery performance.
|
Experimental-InVivo
| 27.55
| 29
| 1,280
| 720
| 5,064,890
| 798
| 1.777778
| 1,412,429
|
train
|
PMC10005960
|
41561_2023_1129_MOESM4_ESM.mp4
|
41561_2023_Article_1129.nxml
|
This video is a clip from Mission 2 showing sediment-laden basal ice at the ice-shelf base. Layout and overlays are as defined for Supplementary Video 1.
|
Other
| 17.9
| 30
| 1,920
| 1,090
| 4,078,494
| 537
| 1.761468
| 1,797,963
|
train
|
PMC10006170
|
41467_2023_36682_MOESM7_ESM.mp4
|
41467_2023_Article_36682.nxml
|
The tail deflected to the right during the left-down tilt, whereas it deflected to the left during the right-down tilt. The body bend angle increased as the head tilt angle increased.
|
Experimental-InVivo
| 17.54
| 60
| 462
| 1,072
| 18,084,064
| 1,052
| 0.43097
| 7,939,357
|
train
|
PMC10006392
|
40820_2023_1034_MOESM3_ESM.mp4
|
40820_2023_Article_1034.nxml
|
Local buckling of the aerogel evaporator under compression showcasing good elasticity and recovery.
|
Experimental-InVivo
| 14.29
| 24
| 368
| 640
| 860,500
| 342
| 0.575
| 480,434
|
train
|
PMC10006392
|
40820_2023_1034_MOESM4_ESM.mp4
|
40820_2023_Article_1034.nxml
|
Demonstrating the salt crystals accumulation and the mechanism of salt diffusion in the evaporator.
|
Experimental-InVivo
| 31.73
| 15
| 640
| 368
| 7,689,439
| 475
| 1.73913
| 1,935,116
|
train
|
PMC10006234
|
41598_2023_30226_MOESM3_ESM.mp4
|
41598_2023_Article_30226.nxml
|
X-ray images of the mixing zone demonstrate the different positions of the mixing zone for low flow and high flow ECMO settings.
|
Experimental-InVivo
| 8.01
| 60
| 1,920
| 1,080
| 6,083,189
| 480
| 1.777778
| 6,032,524
|
train
|
PMC10006234
|
41598_2023_30226_MOESM2_ESM.mp4
|
41598_2023_Article_30226.nxml
|
Position of the mixing zone along the aorta, where LV and ECMO flows blend, was confirmed with fluoroscopy by infusing 40–60 mL of contrast medium in the systemic circulation, via the lateral port of the arterial return cannula.
|
Experimental-InVivo
| 7.41
| 59.94
| 1,920
| 1,080
| 13,551,716
| 444
| 1.777778
| 14,326,796
|
train
|
PMC10006426
|
41467_2023_37033_MOESM4_ESM.mp4
|
41467_2023_Article_37033.nxml
|
A clear two-layer structure can be found showing the organic top layer as a loose and porous layer, different from the dense stiff inorganic underneath layer.
|
Microscopy
| 6.38
| 5
| 1,306
| 954
| 2,287,174
| 31
| 1.368973
| 2,602,156
|
train
|
PMC10006426
|
41467_2023_37033_MOESM5_ESM.mp4
|
41467_2023_Article_37033.nxml
|
The 3D reconstructed images further reveal the ‘mixed’ monolayer character of this SEI layer.
|
Microscopy
| 6.04
| 5
| 1,306
| 954
| 1,752,517
| 30
| 1.368973
| 1,994,206
|
train
|
PMC10008088
|
cureus-0015-00000034814-i01-pmcvs_normal.mp4
|
cureus-0015-00000034814.nxml
|
A reddish mass that periodically protruded out of the mouth when she cried.
|
Clinical-Observation
| 8.1
| 30
| 202
| 360
| 7,029,503
| 243
| 0.561111
| 6,864,703
|
train
|
PMC10006426
|
41467_2023_37033_MOESM6_ESM.mp4
|
41467_2023_Article_37033.nxml
|
A detailed representation of the SEI structure showing the organic and inorganic components.
|
Microscopy
| 28.48
| 25
| 704
| 576
| 18,576,081
| 712
| 1.222222
| 4,722,708
|
train
|
PMC10006507
|
mmc2.mp4
|
main.nxml
|
Time-lapse video of T cell-mediated cytotoxicity against U87vIII cells upon addition of day-14 serum of an NSG mouse treated with pVAX1 or EGFRvIII-DBTE. U87vIII is shown in green (GFP). Caspase-3 induction is shown in blue. CD69 activation is shown in red. Hour marks at the top left corner indicate incubation time after addition of T cells and mouse sera.
|
Experimental-InVivo
| 46.05
| 23.976024
| 960
| 480
| 21,289,754
| 1,104
| 2
| 3,658,817
|
test
|
PMC10008589
|
41467_2023_36851_MOESM3_ESM.mp4
|
41467_2023_Article_36851.nxml
|
C2C12 differentiation can be steered towards the myoblastic or the osteoblastic lineage. Top right: Hoechst and CFSE staining demonstrates the presence of multinucleated syncytia (arrows) two days post-induction of differentiation. Bottom right: alkaline phosphatase activity was detected in C2C12 cells treated with BMP-2 for 8 days.
|
Experimental-InVivo
| 20.04
| 25
| 960
| 540
| 6,271,345
| 501
| 1.777778
| 2,473,076
|
train
|
PMC10008822
|
41467_2023_37086_MOESM10_ESM.mp4
|
41467_2023_Article_37086.nxml
|
Small, fast natural vibration occurs while accompanied by a large photothermal bending.
|
Experimental-Other
| 6.57
| 29.97003
| 1,600
| 900
| 3,639,662
| 196
| 1.777778
| 4,059,012
|
train
|
PMC10008822
|
41467_2023_37086_MOESM6_ESM.mp4
|
41467_2023_Article_37086.nxml
|
Simulated bending of a hexagonal rod-shaped crystal under UV irradiation.
|
Procedure-Simulation
| 6.53
| 29.97003
| 1,600
| 900
| 4,252,352
| 195
| 1.777778
| 4,835,234
|
train
|
PMC10008822
|
41467_2023_37086_MOESM7_ESM.mp4
|
41467_2023_Article_37086.nxml
|
High-speed bending of crystal III under 390 Hz pulsed UV irradiation.
|
Experimental-InVivo
| 11.61
| 29.97003
| 1,600
| 900
| 3,763,241
| 347
| 1.777778
| 2,240,078
|
train
|
PMC10008822
|
41467_2023_37086_MOESM8_ESM.mp4
|
41467_2023_Article_37086.nxml
|
Bending behavior comparison of different crystals under UV light.
|
Experimental-InVivo
| 6.57
| 29.97003
| 1,600
| 900
| 3,956,829
| 196
| 1.777778
| 4,446,992
|
train
|
PMC10007816
|
13041_2023_1017_MOESM2_ESM.mp4
|
13041_2023_Article_1017.nxml
|
Representative calcium imaging movie of Sst-cre mice (right) and simultaneously recorded behavioral movie (left). The tastant solution was poured at the timing when the text color is reversed. The movie plays at 2× speed.
|
Experimental-InVivo
| 66
| 40
| 836
| 372
| 15,744,340
| 2,640
| 2.247312
| 1,904,553
|
train
|
PMC10007816
|
13041_2023_1017_MOESM1_ESM.mp4
|
13041_2023_Article_1017.nxml
|
Representative calcium imaging movie of Prkcd-cre mice (right) and simultaneously recorded behavioral movie (left). The tastant solution was poured at the timing when the text color is reversed. The movie plays at 2× speed.
|
Experimental-InVivo
| 66
| 40
| 826
| 372
| 15,720,775
| 2,640
| 2.22043
| 1,901,699
|
train
|
PMC10008822
|
41467_2023_37086_MOESM9_ESM.mp4
|
41467_2023_Article_37086.nxml
|
Simulation of amplified bending due to pulsed UV light.
|
Procedure-Simulation
| 11.61
| 29.97003
| 1,600
| 900
| 3,698,110
| 347
| 1.777778
| 2,195,076
|
train
|
PMC10010575
|
cureus-0015-00000034511-i02-pmcvs_normal.mp4
|
cureus-0015-00000034511.nxml
|
Video 2 demonstrates bringing the flap across the midline and evaluating tension. It is acceptable to slightly push the buttocks together as this is evaluated; finding this balance is acquired with experience.
|
Procedure-Live
| 9.01
| 29.97003
| 640
| 360
| 4,104,059
| 270
| 1.777778
| 3,645,529
|
train
|
PMC10009088
|
mmc5.mp4
|
main.nxml
|
This video shows the diving beetle swimming in a straight forward motion.
|
Experimental-InVivo
| 26.29
| 29.97003
| 1,062
| 720
| 2,302,883
| 787
| 1.475
| 697,799
|
train
|
PMC10008822
|
41467_2023_37086_MOESM5_ESM.mp4
|
41467_2023_Article_37086.nxml
|
Resonated natural vibration amplified by pulsed UV light at the natural frequency.
|
Experimental-Other
| 27.22
| 29.97003
| 1,600
| 900
| 16,117,042
| 815
| 1.777778
| 4,405,794
|
train
|
PMC10009088
|
mmc6.mp4
|
main.nxml
|
This video captures the diving beetle swimming in a straight backward motion.
|
Experimental-InVivo
| 27.96
| 29.97003
| 1,062
| 720
| 2,361,994
| 837
| 1.475
| 673,470
|
train
|
PMC10006392
|
40820_2023_1034_MOESM2_ESM.mp4
|
40820_2023_Article_1034.nxml
|
Water transport rate through PNFs-based water transportation channel could reach 2827 cm3 h−1.
|
Experimental-InVivo
| 22.19
| 50
| 1,920
| 1,080
| 30,254,430
| 1,109
| 1.777778
| 10,605,576
|
train
|
PMC10005960
|
41561_2023_1129_MOESM3_ESM.mp4
|
41561_2023_Article_1129.nxml
|
This video clip depicts basal scours in the seafloor imaged during Mission 2. Layout and overlays are as defined for Supplementary Video 1.
|
Experimental-InVivo
| 74.46
| 30
| 1,920
| 1,090
| 16,312,471
| 2,233
| 1.761468
| 1,740,437
|
train
|
PMC10010688
|
elife-81549-fig3-video1.mp4
|
elife-81549.nxml
|
This movie represents the z-stacks of optical slices from which the 3D projections of Figure 5K were generated. Microscopy has been done using a light sheet microscope and a 4-day-old klara;cdkn1a animal.
|
Microscopy
| 20.85
| 30
| 1,280
| 720
| 9,494,932
| 625
| 1.777778
| 3,578,754
|
train
|
PMC10010688
|
elife-81549-fig3-video2-pmcvs_normal.mp4
|
elife-81549.nxml
|
This movie represents the z-stacks of optical slices from which the 3D projections of Figure 5M were generated. Microscopy has been done using a light sheet microscope and a 17-day-old klara;cdkn1a animal.
|
Microscopy
| 35.03
| 30
| 202
| 360
| 24,307,948
| 1,050
| 0.561111
| 5,451,103
|
train
|
PMC10010575
|
cureus-0015-00000034511-i01.mp4
|
cureus-0015-00000034511.nxml
|
Video 1 shows a different, but similar, patient and demonstrates how the perianal part of the lateral incision is marked. In this patient, the incision extends significantly higher because of a sinus tract extending to the upper end of the previous cleft lift incision.
|
Procedure-Live
| 15.79
| 29.97003
| 1,920
| 1,080
| 3,356,738
| 473
| 1.777778
| 1,504,917
|
train
|
PMC10011361
|
41598_2023_30949_MOESM2_ESM.mp4
|
41598_2023_Article_30949.nxml
|
Demonstration of the tangential adhesion capability of the PDMS packaged FBG sensor when a moderate lateral force is applied.
|
Experimental-InVivo
| 14.26
| 30
| 1,280
| 720
| 4,458,116
| 427
| 1.777778
| 2,505,947
|
train
|
PMC10011361
|
41598_2023_30949_MOESM1_ESM.mp4
|
41598_2023_Article_30949.nxml
|
Experimental procedure to evaluate the adhesion force of a sample in each situation.
|
Experimental-Other
| 14.22
| 30
| 1,280
| 720
| 4,494,771
| 426
| 1.777778
| 2,526,652
|
train
|
PMC10011361
|
41598_2023_30949_MOESM3_ESM.mp4
|
41598_2023_Article_30949.nxml
|
Illustration of the self-adhesive bonding capability of PDMS-packaged FBG sensors to different materials for various potential applications.
|
Experimental-Other
| 22.09
| 30
| 1,280
| 720
| 6,932,712
| 662
| 1.777778
| 2,505,908
|
train
|
PMC10011361
|
41598_2023_30949_MOESM4_ESM.mp4
|
41598_2023_Article_30949.nxml
|
Demonstration of the dry adhesion provided to FBG sensors in applications where clean and non-invasive monitoring is required.
|
Experimental-Other
| 12.39
| 30
| 1,280
| 720
| 3,859,687
| 371
| 1.777778
| 2,498,652
|
train
|
PMC10010689
|
elife-75906-fig2-video1.mp4
|
elife-75906.nxml
|
The continuity of the plasma membrane could be revealed by semi-automated segmentation, except under certain orientations due to the high membrane curvature of the meisosomes and the missing wedge artefact, which is inherent to electron tomography.
|
ImageAnalysis
| 31.5
| 30
| 1,280
| 720
| 21,213,796
| 945
| 1.777778
| 5,386,408
|
train
|
PMC10011413
|
41467_2023_37036_MOESM4_ESM.mp4
|
41467_2023_Article_37036.nxml
|
Tensile behavior measurements of the hydrogel microfiber showcased in Movie 2.
|
Experimental-InVivo
| 19.01
| 10
| 1,280
| 720
| 4,109,323
| 190
| 1.777778
| 1,724,587
|
train
|
PMC10011413
|
41467_2023_37036_MOESM3_ESM.mp4
|
41467_2023_Article_37036.nxml
|
Spinning of hydrogel microfibers illustrated in Movie 1.
|
Procedure-Simulation
| 16.41
| 10
| 1,280
| 720
| 6,046,359
| 164
| 1.777778
| 2,943,693
|
train
|
PMC10005960
|
41561_2023_1129_MOESM2_ESM.mp4
|
41561_2023_Article_1129.nxml
|
This video is a clip from a synchronized composite of Mission 2 showing seafloor Imprint A. Forward-looking multibeam sonar, forward-looking upper and lower analogue cameras and high-definition downward-looking camera streams are shown. Overlays (r, p, y) indicate the vehicle attitude in degrees of roll, pitch and yaw. ‘SOG’ indicates speed over ground in m s−1, and ‘range’ is the straight-line distance between the vehicle and the borehole. ‘Z_ice’, ‘Z_veh’ and ‘Z_bed’ indicate the elevation of the ice base overhead, vehicle and seafloor, respectively. ‘CT’, ‘SA’, ‘thermal driving’ and ‘DO’ indicate Conservative Temperature (Θ, °C), Absolute Salinity (g kg−1), thermal driving (Θ - Θfp) and pressure- and salinity-corrected dissolved oxygen concentrations (µmol l−1), respectively. Laser scale is 5 cm when present.
|
Other
| 100.09
| 30
| 1,920
| 1,090
| 28,866,645
| 3,002
| 1.761468
| 2,289,159
|
test
|
PMC10011555
|
41598_2023_30953_MOESM2_ESM.mp4
|
41598_2023_Article_30953.nxml
|
Workflow for the analysis of 3D fiber orientations from large-volume fluorescence microscopy images, showing the sample preparation, imaging and image processing stages (created with BioRender.com).
|
Microscopy
| 2.8
| 5
| 900
| 450
| 1,242,426
| 14
| 2
| 3,546,874
|
train
|
PMC10011413
|
41467_2023_37036_MOESM6_ESM.mp4
|
41467_2023_Article_37036.nxml
|
Demonstration of supercontraction effect by a hydrogel microfiber web in Movie 4.
|
Experimental-InVivo
| 32.11
| 10
| 1,280
| 720
| 7,110,022
| 321
| 1.777778
| 1,765,934
|
train
|
PMC10011413
|
41467_2023_37036_MOESM5_ESM.mp4
|
41467_2023_Article_37036.nxml
|
Demonstration of moisture-induced rapid self-healing of multiple cracks on the microfiber in Movie 3.
|
Experimental-InVivo
| 34.41
| 10
| 1,280
| 720
| 12,136,016
| 344
| 1.777778
| 2,816,960
|
train
|
PMC10005960
|
41561_2023_1129_MOESM5_ESM.mp4
|
41561_2023_Article_1129.nxml
|
This video is a clip from the crevasse survey at the end of Mission 3. Layout and overlays are as defined for Supplementary Video 1.
|
Other
| 113.76
| 30
| 1,920
| 1,090
| 24,423,435
| 3,412
| 1.761468
| 1,701,891
|
train
|
PMC10011585
|
41467_2023_37082_MOESM10_ESM.mp4
|
41467_2023_Article_37082.nxml
|
Supplementary Movie S1 shows the formation of skyrmions and more complex spin textures due to the presence of Dzyaloshinskii-Moriya interaction in CrGeTe3.
|
Experimental-InVivo
| 100
| 1
| 880
| 656
| 2,968,089
| 100
| 1.341463
| 237,341
|
train
|
PMC10011413
|
41467_2023_37036_MOESM7_ESM.mp4
|
41467_2023_Article_37036.nxml
|
Demonstration of shape-memory behavior in both compressive and tensile modes using hydrogel microfiber in Movie 5.
|
Experimental-InVivo
| 25.52
| 10
| 1,280
| 720
| 7,515,601
| 255
| 1.777778
| 2,351,704
|
train
|
PMC10008577
|
41598_2023_31213_MOESM2_ESM.mp4
|
41598_2023_Article_31213.nxml
|
A dog performing Kong Test (on the left side) and Food-Reaching Test (on the right side).
|
Experimental-InVivo
| 60
| 30
| 1,920
| 1,440
| 71,882,381
| 1,800
| 1.333333
| 9,583,121
|
train
|
PMC10011585
|
41467_2023_37082_MOESM4_ESM.mp4
|
41467_2023_Article_37082.nxml
|
Supplementary Movie S2 illustrates the spin states generated in CrGeTe3 under low fluence conditions, where the final topological charge is nearly zero.
|
Experimental-InVivo
| 16
| 10
| 1,500
| 600
| 7,889,195
| 160
| 2.5
| 3,943,172
|
train
|
PMC10011585
|
41467_2023_37082_MOESM6_ESM.mp4
|
41467_2023_Article_37082.nxml
|
Supplementary Movie S4 showcases the simultaneous formation of skyrmions and skyrmioniums within a suitable fluence range in CrGeTe3.
|
Experimental-InVivo
| 4.4
| 25
| 1,500
| 600
| 1,194,435
| 110
| 2.5
| 2,167,707
|
train
|
PMC10011585
|
41467_2023_37082_MOESM5_ESM.mp4
|
41467_2023_Article_37082.nxml
|
Supplementary Movie S3 depicts the formation of spin stripes as fluence increases beyond low levels, demonstrating a transition to non-trivial spin objects.
|
Experimental-InVivo
| 12.6
| 25
| 1,500
| 600
| 1,786,144
| 315
| 2.5
| 1,131,106
|
train
|
PMC10006392
|
40820_2023_1034_MOESM5_ESM.mp4
|
40820_2023_Article_1034.nxml
|
Illustrating the maintenance of the solar evaporator's efficiency during continuous operation.
|
Experimental-Other
| 42.46
| 50
| 1,920
| 1,080
| 55,820,743
| 2,123
| 1.777778
| 10,513,200
|
train
|
PMC10011585
|
41467_2023_37082_MOESM9_ESM.mp4
|
41467_2023_Article_37082.nxml
|
Supplementary Movie S7 discusses the characterisation on x-ray diffraction patterns, domain structures, and hysteresis loop obtained from experimental results.
|
Experimental-InVivo
| 5.2
| 25
| 1,500
| 600
| 2,698,079
| 130
| 2.5
| 4,147,118
|
train
|
PMC10011585
|
41467_2023_37082_MOESM8_ESM.mp4
|
41467_2023_Article_37082.nxml
|
Supplementary Movie S8 provides additional details on the measurements conducted with wide-field Kerr microscopy (WFKM) for different spin states.
|
Microscopy
| 13.8
| 25
| 1,500
| 600
| 6,300,173
| 345
| 2.5
| 3,649,329
|
train
|
PMC10011585
|
41467_2023_37082_MOESM7_ESM.mp4
|
41467_2023_Article_37082.nxml
|
Supplementary Movies S5 and S6 exhibit the hybrid spin states consisting of skyrmions, stripes, and skyrmioniums formed at high energy fluences.
|
Experimental-InVivo
| 17.6
| 25
| 1,500
| 600
| 7,103,389
| 440
| 2.5
| 3,225,978
|
train
|
PMC10011411
|
41598_2023_31214_MOESM1_ESM.mp4
|
41598_2023_Article_31214.nxml
|
UAV taking off, flying and landing on the sea surface. It was filmed on different days by an observation drone.
|
Experimental-InVivo
| 26.66
| 30
| 1,920
| 1,080
| 26,923,845
| 799
| 1.777778
| 7,887,702
|
train
|
PMC10011724
|
mbc-34-ar13-s002-pmcvs_normal.mp4
|
mbc-34-ar13.nxml
|
MCF7 cells transiently transfected with sh-vector control and seeded on collagen-coated dishes. Representative 50 minutes time-lapse movies of cells. Scale bar: 50 μm.
|
Experimental-InVivo
| 10
| 1
| 360
| 360
| 714,816
| 10
| 1
| 571,145
|
train
|
PMC10011724
|
mbc-34-ar13-s003-pmcvs_normal.mp4
|
mbc-34-ar13.nxml
|
MCF7 cells transiently transfected with sh-BPGAP1 were seeded on collagen-coated dishes. Representative 50 minutes time-lapse movies of cells. Scale bar: 50 μm.
|
Experimental-InVitro
| 10
| 1
| 360
| 360
| 573,303
| 10
| 1
| 457,935
|
train
|
PMC10011724
|
mbc-34-ar13-s004.mp4
|
mbc-34-ar13.nxml
|
MDA-MB-231 cells stably expressing mCherry vector control (left) or mCherry-BPGAP1 (right) were seeded on collagen-coated dishes. Time-lapse movies of cells were acquired for 105 minutes; 3 frames per second. Scale bar: 70 μm.
|
Experimental-InVivo
| 7.33
| 3
| 620
| 310
| 480,409
| 21
| 2
| 522,833
|
train
|
PMC10011603
|
41467_2023_36945_MOESM9_ESM.mp4
|
41467_2023_Article_36945.nxml
|
Supplementary Video 7 displays how SNPH affects the gliding motility of dynein-driven complexes.
|
Experimental-InVivo
| 4
| 125
| 1,272
| 900
| 5,845,151
| 500
| 1.413333
| 11,684,446
|
train
|
PMC10011603
|
41467_2023_36945_MOESM7_ESM.mp4
|
41467_2023_Article_36945.nxml
|
Supplementary Video 5 further demonstrates the motility of KTM complexes in different Ca2+ conditions.
|
Experimental-InVivo
| 3.33
| 30
| 4,096
| 2,054
| 5,393,585
| 99
| 1.994158
| 12,941,469
|
train
|
PMC10011603
|
41467_2023_36945_MOESM6_ESM.mp4
|
41467_2023_Article_36945.nxml
|
Supplementary Video 4 captures the colocalization of kinesin and TRAK in the presence of physiological and excess Ca2+.
|
Experimental-InVitro
| 3.33
| 30
| 4,096
| 2,064
| 8,509,971
| 99
| 1.984496
| 20,420,779
|
train
|
PMC10011730
|
mbc-34-ar19-s005-pmcvs_normal.mp4
|
mbc-34-ar19.nxml
|
Movie showing Abp1(SH3Δ)–eGFP forming apparently normal plasma membrane-associated patches, as well as motile patches that are not associated with the plasma membrane.
|
Experimental-InVivo
| 10
| 30
| 300
| 176
| 1,229,061
| 300
| 1.704545
| 979,684
|
train
|
PMC10011730
|
mbc-34-ar19-s004-pmcvs_normal.mp4
|
mbc-34-ar19.nxml
|
Example kymographs of persistent patches (a and b) and of transient patches (c and d) at the plasma membrane. Pictures of representative cells are maximum-intensity projections of 4 min 50 s–long time lapses of at least three independent experiments. Scale bar: 2 μm.
|
Experimental-InVivo
| 2
| 15
| 300
| 172
| 282,384
| 30
| 1.744186
| 1,124,680
|
train
|
PMC10011603
|
41467_2023_36945_MOESM8_ESM.mp4
|
41467_2023_Article_36945.nxml
|
Supplementary Video 6 showcases the effect of SNPH on the motility of kinesin on microtubules.
|
Experimental-InVitro
| 5
| 30
| 2,070
| 2,040
| 15,779,213
| 150
| 1.014706
| 25,244,256
|
train
|
PMC10011603
|
41467_2023_36945_MOESM4_ESM.mp4
|
41467_2023_Article_36945.nxml
|
Supplementary Video 2 demonstrates the activation of kinesin-TRAK complexes on microtubules in the presence of MAP7.
|
Experimental-InVivo
| 5
| 30
| 4,096
| 1,956
| 21,443,425
| 150
| 2.09407
| 34,306,969
|
train
|
PMC10011730
|
mbc-34-ar19-s006-pmcvs_normal.mp4
|
mbc-34-ar19.nxml
|
Movie illustrating the motility of Las17 and Vrp1 patches in abp1(SH3Δ) cells, indicating a defect in their association to the invagination base.
|
Experimental-InVivo
| 16.67
| 15
| 230
| 360
| 4,239,390
| 250
| 0.638889
| 2,033,257
|
train
|
End of preview.
PMC-Vid: A Large-Scale Biomedical Video Captioning Dataset
77K biomedical video–caption pairs curated from PubMed Central Open Access (PMC-OA) papers.
The PMC-Vid was presented at the ICCV 2025 CVAMD Workshop; the paper is available on the CVF Open Access website.
Dataset Files
| File | Description |
|---|---|
pmc-vid_paper.csv |
Paper-level metadata, including download paths and journal information |
pmc-vid_caption.csv |
Video–caption pairs (77K entries) |
download_pmc.py |
Helper script to download video files from PMC |
Dataset Structure
pmc-vid_paper.csv
Paper-level metadata (merged from PMC Open Access file list and curated paper data). oa_file_list.csv is available on PMC server.
| Column | Description |
|---|---|
PMC_ID |
Unique PMC article identifier |
PMID |
PubMed ID |
title |
Paper title |
abstract |
Abstract text |
journal |
Journal name |
main_category |
Main category |
sub_category |
Subcategory of the paper |
File |
Path to the PMC archive package (from oa_file_list.csv) |
Article Citation |
Citation text (journal, volume, pages, etc.) (from oa_file_list.csv) |
Last Updated (YYYY-MM-DD HH:MM:SS) |
Metadata update time (from oa_file_list.csv) |
License |
License type (from oa_file_list.csv) |
pmc-vid_caption.csv
Video-level metadata and generated captions.
| Column | Description |
|---|---|
PMC_ID |
Corresponding paper ID |
mp4_name |
Video filename |
nxml_file |
Associated NXML file name |
caption |
Caption text |
category |
Video category |
duration |
Video duration (seconds) |
fps |
Frames per second |
width, height |
Video resolution |
file_size |
File size in bytes |
frame_count |
Total frame count |
aspect_ratio |
Aspect ratio |
bitrate |
Bitrate (kbps) |
data |
Internal reference metadata |
Downloading Videos
We provide a helper script to download the original videos directly from PMC:
# Download videos using paper information
python download_pmc.py pmc-vid_paper.csv ./videos --workers 8
This script uses the official PMC Open Access FTP structure for reproducibility.
License
The PMC-Vid dataset is released under the Creative Commons Attribution-NonCommercial (CC BY-NC 4.0) license. You are free to use, share, and adapt the dataset for non-commercial research and educational purposes, provided that proper attribution is given.
The generated captions were created using OpenAI GPT models. Accordingly, users must also comply with the OpenAI Terms of Use and Sharing & Publication Policy.
Note: Each individual video in the dataset originates from PMC and retains its original license. When using or redistributing individual videos, please follow the specific license terms provided by the source article on PMC.
Citation
If you use PMC-Vid in your research, please cite:
@InProceedings{Yamagishi_2025_ICCV,
author = {Yamagishi, Yosuke and Saito, Kuniaki and Hashimoto, Atsushi and Ushiku, Yoshitaka},
title = {PMC-Vid: A Large-Scale Biomedical Video Captioning Dataset},
booktitle = {Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops},
month = {October},
year = {2025},
pages = {1254-1264}
}
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