Datasets:

surrey-nlp
/

PLOD-unfiltered

id stringlengths 1 6	tokens sequence	pos_tags sequence	ner_tags sequence
0	[ "Abbreviations", ":", "GEMS", ",", "Global", "Enteric", "Multicenter", "Study", ";", "VIP", ",", "ventilated", "improved", "pit", "." ]	[ 8, 13, 12, 13, 12, 12, 12, 12, 13, 12, 13, 16, 0, 8, 13 ]	[ 0, 0, 1, 0, 3, 4, 4, 4, 0, 1, 0, 3, 4, 4, 0 ]
1	[ "Fractions", "from", "FPLC", "purification", "were", "treated", "with", "Laemmli", "buffer", "[", "82", "]", "with", "10", "mM", "1,4", "-", "dithiothreitol", "(", "DTT", ")", "and", "heated", "for", "5", "m", "at", "85", "°", "C", "then", "analyzed", "on", "a", "4", "%", "to", "15", "%", "discontinuous", "SDS", "gel", "with", "a", "6", "%", "stacking", "gel", "run", "at", "ambient", "temperature", "at", "a", "constant", "100", "V." ]	[ 8, 1, 12, 8, 3, 16, 1, 12, 8, 17, 17, 17, 1, 9, 8, 9, 13, 8, 13, 12, 13, 5, 16, 1, 9, 8, 1, 9, 8, 8, 2, 16, 1, 6, 9, 8, 10, 9, 8, 0, 12, 8, 1, 6, 9, 8, 8, 8, 16, 1, 0, 8, 1, 6, 0, 9, 8 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
2	[ "Two", "epithelial", "cytokines", "other", "than", "IL33", ",", "IL25", ",", "and", "thymic", "stromal", "lymphopoietin", "(", "TSLP", ")", "are", "known", "to", "activate", "ILC2", "in", "the", "lung", "[", "22,24", "]", "." ]	[ 9, 0, 8, 0, 1, 8, 13, 8, 13, 5, 0, 0, 8, 13, 12, 13, 3, 16, 10, 16, 12, 1, 6, 8, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0 ]
3	[ "We", "developed", "a", "variant", "of", "gene", "set", "enrichment", "analysis", "(", "GSEA", ")", "to", "determine", "whether", "a", "genetic", "pathway", "shows", "evidence", "for", "age", "regulation", "[", "23", "]", "." ]	[ 11, 16, 6, 8, 1, 8, 8, 8, 8, 13, 12, 13, 10, 16, 14, 6, 0, 8, 16, 8, 1, 8, 8, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
4	[ "Red", "represents", "samples", "having", "the", "normalized", "pY232", "and/or", "pY291", "values", "in", "cancer", "tissues", "≥", "1.1", "folds", "of", "normal", "tissues", "(", "of", "which", "enhanced", "pY232", "and/or", "pY291", "level", "may", "be", "indicative", "of", "dominant", "survival", "mode", "of", "Fas", "signaling", ")", ";", "blue", "represents", "samples", "having", "both", "normalized", "pY232", "and", "pY291", "values", "<", "1.1", "(", "of", "which", "pY232", "and", "pY291", "levels", "less", "than", "or", "equal", "to", "normal", "may", "be", "indicative", "of", "the", "apoptosis", "-", "ready", "mode", "of", "Fas", "signaling", ")", ".", "(", "D", ")", "Lysates", "of", "rectal", "cancer", "tissues", "before", "and", "after", "radiotherapy", "(", "RT", ")", "from", "each", "of", "the", "nine", "patients", "were", "subjected", "to", "SDS", "-", "PAGE", "and", "immunoblotting", "with", "antibodies", "against", "pY232", ",", "pY291", ",", "and", "C", "-", "terminal", "(", "C", "-", "ter", ")", "of", "Fas", "." ]	[ 8, 16, 8, 16, 6, 16, 12, 5, 8, 8, 1, 8, 8, 13, 9, 8, 1, 0, 8, 13, 1, 11, 16, 12, 5, 8, 8, 3, 3, 0, 1, 0, 8, 8, 1, 12, 8, 13, 13, 8, 16, 8, 16, 5, 16, 12, 5, 8, 8, 1, 9, 13, 1, 11, 12, 5, 8, 8, 0, 1, 5, 0, 1, 0, 3, 3, 0, 1, 6, 8, 8, 0, 8, 1, 12, 8, 13, 13, 13, 17, 13, 8, 1, 0, 8, 8, 1, 5, 1, 8, 13, 12, 13, 1, 11, 1, 6, 9, 8, 3, 16, 1, 12, 8, 12, 5, 8, 1, 8, 1, 12, 13, 8, 13, 5, 8, 8, 0, 13, 8, 8, 8, 13, 1, 12, 13 ]	[ 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
5	[ "Relative", "risks", "(", "RRs", ")", "with", "95", "%", "confidence", "intervals", "(", "CIs", ")", "are", "reported", "." ]	[ 0, 8, 13, 12, 13, 1, 9, 8, 8, 8, 13, 12, 13, 3, 16, 13 ]	[ 3, 4, 0, 1, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0 ]
6	[ "Increasing", "concentrations", "of", "the", "p53", "activators", "significantly", "decrease", "the", "levels", "of", "SOD1G85R", "but", "not", "the", "endogenous", "WTSOD1", "proteins", "in", "western", "blots", "of", "both", "supernatant", "and", "pellet", "fractions", ".", "(", "B", ")", "A", "decrease", "in", "p53", "as", "the", "result", "of", "shRNA", "knockdown", "increases", "the", "levels", "of", "SOD1G85R", "but", "not", "WT", "SOD1", "proteins", "in", "the", "SOD1G85R", "aggregation", "assay", ",", "as", "shown", "by", "western", "blots", "of", "both", "supernatant", "(", "S", ")", "(", "n", "=", "2", ")", "and", "pellet", "(", "P", ")", "(", "n", "=", "3", ")", "fractions", ".", "(", "C", ")", "A", "complete", "absence", "of", "p53", "increases", "the", "accumulation", "of", "SOD1G85R", "mutant", "proteins", "in", "p53–/", "–", "HCT116", "cells", "when", "compared", "with", "controls", "." ]	[ 16, 8, 1, 6, 8, 8, 2, 8, 6, 8, 1, 12, 5, 10, 6, 0, 12, 8, 1, 0, 8, 1, 5, 8, 5, 8, 8, 13, 13, 17, 13, 6, 8, 1, 8, 14, 6, 8, 1, 12, 8, 16, 6, 8, 1, 12, 5, 10, 12, 12, 8, 1, 6, 12, 8, 8, 13, 14, 16, 1, 0, 8, 1, 5, 8, 13, 12, 13, 13, 8, 15, 9, 13, 5, 8, 13, 12, 13, 13, 8, 15, 9, 13, 8, 13, 13, 17, 13, 6, 0, 8, 1, 8, 16, 6, 8, 1, 12, 0, 8, 1, 8, 13, 12, 8, 14, 16, 1, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
7	[ "Pravastatin", "sodium", "(", "PSS", ",", "Fig", "2.9", ")", "is", "the", "only", "included", "NP", "of", "microbial", "origin", "." ]	[ 0, 8, 13, 12, 13, 8, 9, 13, 3, 6, 0, 16, 12, 1, 0, 8, 13 ]	[ 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0 ]
8	[ "I", "have", "read", "the", "journal", "'s", "policy", "and", "the", "authors", "of", "this", "manuscript", "have", "the", "following", "competing", "interests", ":", "DF", ",", "EJ", ",", "and", "NNL", "are", "staff", "members", "of", "the", "World", "Health", "Organization", "(", "WHO", ")", "." ]	[ 11, 16, 16, 6, 8, 10, 8, 5, 6, 8, 1, 6, 8, 16, 6, 16, 16, 8, 13, 12, 13, 12, 13, 5, 12, 3, 8, 8, 1, 6, 12, 12, 12, 13, 12, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0 ]
9	[ "Characteristics", "were", "compared", "across", "the", "matched", "groups", "using", "standardized", "mean", "differences", "(", "SMDs", ")", ",", "with", "an", "SMD", ">", "0.1", "indicating", "a", "clinically", "important", "difference", "." ]	[ 8, 3, 16, 1, 6, 16, 8, 16, 0, 0, 8, 13, 12, 13, 13, 1, 6, 12, 1, 9, 16, 6, 2, 0, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0 ]
10	[ "Nutrients", "that", "are", "rich", "in", "seafood", "were", "selected", "to", "be", "included", "this", "study", ":", "protein", ",", "eicosapentaenoic", "acid", "(", "EPA", ")", "and", "docosahexaenoic", "acid", "(", "DHA", ")", ",", "vitamins", "(", "A", ",", "D", ",", "B12", ",", "and", "niacin", ")", ",", "and", "minerals", "(", "zinc", "and", "selenium", ",", "and", "iron", ")", "." ]	[ 8, 11, 3, 0, 1, 8, 3, 16, 10, 3, 16, 6, 8, 13, 8, 13, 8, 8, 13, 12, 13, 5, 8, 8, 13, 12, 13, 13, 8, 13, 8, 13, 8, 13, 8, 13, 5, 8, 13, 13, 5, 8, 13, 8, 5, 8, 13, 5, 8, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
11	[ "To", "test", "if", "this", "polymorphism", "modulates", "CD24", "mRNA", "stability", ",", "we", "constructed", "two", "plasmids", "(", "pTracer", "CMV2", "-", "CD24TG", "and", "pTracer", "CMV2", "-", "CD24del", ";", "Figure", "5", ",", "top", "panel", ")", "and", "transfected", "Chinese", "hamster", "ovary", "(", "CHO", ")", "cells", "with", "the", "two", "constructs", "." ]	[ 10, 16, 14, 6, 8, 16, 8, 8, 8, 13, 11, 16, 9, 8, 13, 12, 8, 13, 8, 5, 12, 8, 13, 8, 13, 12, 9, 13, 0, 8, 13, 5, 16, 0, 8, 8, 13, 12, 13, 8, 1, 6, 9, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0 ]
12	[ "Blood", "pressure", "(", "BP", ")", "will", "be", "controlled", "after", "each", "visit", "." ]	[ 8, 8, 13, 12, 13, 3, 3, 16, 1, 6, 8, 13 ]	[ 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0 ]
13	[ "Briefly", ",", "Phenotypic", "Age", "is", "calculated", "using", "chronological", "age", "and", "9", "biomarkers", "(", "albumin", ",", "creatinine", ",", "glucose", ",", "[", "log", "]", "C", "-", "reactive", "protein", "[", "CRP", "]", ",", "lymphocyte", "percent", ",", "mean", "cell", "volume", ",", "red", "blood", "cell", "distribution", "width", ",", "alkaline", "phosphatase", ",", "and", "white", "blood", "cell", "count", ")", "that", "were", "selected", "using", "a", "Cox", "proportional", "hazard", "elastic", "net", "model", "for", "mortality", "based", "on", "10", "-", "fold", "cross", "-", "validation", "." ]	[ 2, 13, 0, 12, 3, 16, 16, 0, 8, 5, 9, 8, 13, 8, 13, 8, 13, 8, 13, 13, 17, 13, 8, 8, 0, 8, 13, 12, 13, 13, 8, 8, 13, 0, 8, 8, 13, 0, 8, 8, 8, 8, 13, 0, 8, 13, 5, 0, 8, 8, 8, 13, 11, 3, 16, 16, 6, 12, 0, 8, 0, 8, 8, 1, 8, 16, 1, 0, 8, 0, 8, 8, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
14	[ "However", ",", "c", "-", "Fos", ",", "PStat3", ",", "and", "PIP3", "formation", "were", "not", "elevated", "in", "response", "to", "leptin", "in", "obese", "GSL", "-", "deficient", "mice", "6", "wk", "p.i", ".", "(", "Figures", "7A", ",", "B", "and", "S10A", ")", ".", "No", "significant", "changes", "were", "found", "in", "mediobasal", "hypothalamus", "(", "MBH", ")", "baseline", "mRNA", "expression", "of", "Pomc", "and", "cocaine-", "and", "amphetamine", "-", "regulated", "transcript", "(", "Cart", ")", "mRNA", "6", "wk", "p.i", ".", "(", "Figure", "S10B", ")", "." ]	[ 2, 13, 8, 13, 8, 13, 12, 13, 5, 12, 8, 3, 10, 16, 1, 8, 1, 8, 1, 0, 12, 13, 0, 8, 9, 12, 8, 13, 13, 8, 9, 13, 8, 5, 8, 13, 13, 6, 0, 8, 3, 16, 1, 0, 8, 13, 12, 13, 8, 8, 8, 1, 12, 5, 8, 5, 8, 13, 16, 8, 13, 12, 13, 8, 9, 12, 8, 13, 13, 8, 8, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0 ]
15	[ "It", "has", "been", "found", "that", "control", "has", "been", "centered", "around", "cyclin", "-", "dependent", "protein", "kinases", "(", "CDKs", ")", ",", "which", "trigger", "the", "major", "events", "of", "the", "eukaryotic", "cell", "cycle", "." ]	[ 11, 3, 3, 16, 14, 8, 3, 3, 16, 1, 8, 13, 0, 8, 8, 13, 12, 13, 13, 11, 16, 6, 0, 8, 1, 6, 0, 8, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
16	[ "The", "asparagine", "hydroxylase", ",", "termed", "factor", "inhibiting", "HIF", "HIF", "(", "FIH", ")", "(", "Uniprot", "accession", "number", ":", "Q9NWT6", ")", ",", "hydroxylates", "an", "asparagine", "residue", "within", "HIFα", "subunits", "(", "N803", "on", "HIF-1α", ")", ",", "resulting", "in", "steric", "inhibition", "of", "its", "interaction", "with", "the", "transcriptional", "co", "-", "activator", "p300", "/", "CBP", ",", "thereby", "inhibiting", "HIF", "-", "dependent", "transcription", "[", "2", "]", "." ]	[ 6, 8, 8, 13, 16, 8, 16, 8, 12, 13, 12, 13, 13, 0, 8, 8, 13, 8, 13, 13, 16, 6, 8, 8, 1, 8, 8, 13, 9, 1, 12, 13, 13, 16, 1, 0, 8, 1, 11, 8, 1, 6, 0, 8, 13, 8, 8, 15, 12, 13, 2, 16, 12, 13, 0, 8, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 3, 4, 4, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0 ]
17	[ "The", "manuscript", "by", "Varma", "et", "al", "explores", "the", "relationships", "between", "bile", "acid", "(", "BA", ")", "levels", "/", "synthesis", "and", "dementia", "related", "pathology", ",", "such", "as", "white", "matter", "lesions", "(", "WML", ")", "and", "amyloid", "deposition", ",", "as", "well", "as", "vascular", "dementia", "risk", "and", "sex", "related", "differences", "." ]	[ 6, 8, 1, 12, 12, 8, 16, 6, 8, 1, 8, 8, 13, 12, 13, 8, 15, 8, 5, 8, 16, 8, 13, 0, 1, 0, 8, 8, 13, 12, 13, 5, 8, 8, 13, 1, 2, 1, 0, 8, 8, 5, 8, 16, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
18	[ "However", ",", "current", "literature", "on", "the", "stability", "of", "the", "steroids", "in", "DBS", "is", "very", "limited", ",", "dealing", "exclusively", "with", "17OHP", "[", "10–16", "]", "or", "cortisol", "(", "Cort", ")", "[", "17", "]", "." ]	[ 2, 13, 0, 8, 1, 6, 8, 1, 6, 8, 1, 12, 3, 2, 0, 13, 16, 2, 1, 12, 13, 9, 13, 5, 8, 13, 12, 13, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 3, 0, 1, 0, 0, 0, 0, 0 ]
19	[ "CD", "is", "the", "most", "common", "form", "of", "inflammatory", "bowel", "disease", ",", "the", "other", "being", "ulcerative", "colitis", "(", "UC", ")", ".", "We", "genotyped", "a", "cohort", "of", "246", "Belgian", "UC", "patients", "(", "Caucasians", ")", "for", "IL23R", "(", "rs11209026", ")", ",", "ATG16L1", "(", "rs2241880", ")", ",", "and", "the", "novel", "5p13.1", "locus", "(", "rs4613763", ")", "." ]	[ 12, 3, 6, 2, 0, 8, 1, 0, 8, 8, 13, 6, 0, 3, 0, 8, 13, 12, 13, 13, 11, 16, 6, 8, 1, 9, 0, 12, 8, 13, 12, 13, 1, 8, 13, 9, 13, 13, 8, 13, 9, 13, 13, 5, 6, 0, 8, 8, 13, 9, 13, 13 ]	[ 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
20	[ "Endophthalmitis", "after", "vitreous", "surgery", "is", "an", "uncommon", "but", "a", "devastating", "complication.[1", "]", "The", "reported", "incidence", "of", "endophthalmitis", "after", "vitreous", "surgery", "ranges", "from", "0.05", "%", "to", "0.02", "%", "with", "20", "-", "G", "vitrectomy.[2–10", "]", "Initial", "reports", "showed", "higher", "rates", "of", "post", "-", "minimally", "invasive", "vitreoretinal", "surgery", "(", "MIVS", ")", "endophthalmitis", ",", "whereas", "recent", "reports", "have", "shown", "a", "declining", "trend.[6,8,10,11", "]" ]	[ 8, 1, 0, 8, 3, 6, 0, 5, 6, 0, 8, 13, 6, 16, 8, 1, 8, 1, 0, 8, 16, 1, 9, 8, 1, 9, 8, 1, 9, 0, 8, 8, 13, 0, 8, 16, 0, 8, 1, 0, 0, 0, 0, 0, 8, 13, 12, 13, 8, 13, 14, 0, 8, 3, 16, 6, 16, 9, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
21	[ "Body", "mass", "index", "(", "BMI", ")", "was", "calculated", "as", "the", "weight", "in", "kilograms", "divided", "by", "the", "square", "of", "the", "height", "in", "meters", "." ]	[ 8, 8, 8, 13, 12, 13, 3, 16, 1, 6, 8, 1, 8, 16, 1, 6, 8, 1, 6, 8, 1, 8, 13 ]	[ 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
22	[ "Source", "data", "are", "available", "from", "https://figshare.com/s/b14c8e6cb1fc5135dd87", ".", "#", "Cells", ",", "number", "of", "cells", ";", "μ", "CA", ",", "average", "cell", "area", ";", "LATE", ",", "a", "timing", "factor", ";", "Leaf", "A", ",", "leaf", "area", ";", "spch", ",", "speechless", "." ]	[ 8, 8, 3, 0, 1, 17, 13, 13, 8, 13, 8, 1, 8, 13, 13, 12, 13, 0, 8, 8, 13, 12, 13, 6, 8, 8, 13, 8, 8, 13, 8, 8, 13, 12, 13, 0, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 3, 4, 4, 0, 0, 0, 0, 0, 0, 0, 1, 0, 3, 0 ]
23	[ "The", "best", "linear", "unbiased", "estimates", "(", "BLUEs", ")", "of", "the", "481", "BC1F3:4", "families", "were", "estimated", "following", "the", "model", ":", "yijm", "=", "μ+gi+ej+geij+δ(j)m+εijm", ",", "where", "yijm", "is", "the", "phenotype", "of", "the", "ith", "(", "i", "=", "1,2", "…", ",", "481", ")", "genotype", "in", "the", "jth", "(", "j", "=", "1,2,3,4", ")", "environment", ",", "the", "mth", "(", "m", "=", "1,2", ")", "replicate", "effect", "was", "nested", "in", "each", "environment", ".", "μ", "is", "the", "overall", "mean", ",", "gi", "is", "the", "genotype", "effect", ",", "ej", "is", "the", "environmental", "effect", ",", "geij", "is", "the", "G×E", "effect", ",", "δ(j)m", "is", "the", "replicate", "effect", ",", "and", "εijm", "~", "N", "(", "0", ",", "σε2", ")", "is", "the", "error", "term", "." ]	[ 6, 0, 0, 0, 8, 13, 12, 13, 1, 6, 9, 8, 8, 3, 16, 16, 6, 8, 13, 8, 15, 17, 13, 14, 8, 3, 6, 8, 1, 6, 8, 13, 8, 15, 9, 13, 13, 9, 13, 8, 1, 6, 8, 13, 8, 15, 9, 13, 8, 13, 6, 8, 13, 8, 15, 9, 13, 8, 8, 3, 16, 1, 6, 8, 13, 13, 3, 6, 0, 8, 13, 8, 3, 6, 8, 8, 13, 8, 3, 6, 0, 8, 13, 8, 3, 6, 12, 8, 13, 8, 3, 6, 8, 8, 13, 5, 8, 13, 8, 13, 9, 13, 9, 13, 3, 6, 8, 8, 13 ]	[ 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
24	[ "KO", ",", "knockout", ";", "PSD", ",", "postsynaptic", "density", "." ]	[ 12, 13, 8, 13, 12, 13, 0, 8, 13 ]	[ 1, 0, 3, 0, 1, 0, 3, 4, 0 ]
25	[ "Small", "RNA", "sequencing", "was", "performed", "to", "profile", "miRNA", "expression", "in", "SW480", "and", "SW620", "cell", "lysates", "(", "CLs", ")", "and", "their", "released", "EVs", ".", "Initially", ",", "a", "total", "of", "160.46", "million", "raw", "reads", "were", "generated", "by", "an", "Illumina", "HiSeq-2000", "system", "for", "all", "the", "samples", ",", "yielding", "an", "average", "12.77", "million", "clean", "reads", "." ]	[ 0, 8, 8, 3, 16, 10, 16, 12, 8, 1, 9, 5, 9, 8, 8, 13, 12, 13, 5, 11, 16, 12, 13, 2, 13, 6, 8, 1, 9, 9, 0, 8, 3, 16, 1, 6, 12, 12, 8, 1, 6, 6, 8, 13, 16, 6, 0, 9, 9, 0, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
26	[ "Inter-", "and", "intra", "-", "rater", "reliability", "was", "determined", "by", "means", "of", "intraclass", "correlation", "coefficients", "(", "ICC", ")", "using", "R", "Studio", "(", "Version", "1.1.456", ";", "RStudio", ")", "based", "on", "a", "mean", "of", "2", "raters", ",", "consistency", ",", "2", "-", "way", "mixed", "-", "effects", "model", "for", "the", "qualitative", "analysis", "[", "42", "]", "." ]	[ 0, 5, 0, 13, 0, 8, 3, 16, 1, 8, 1, 8, 8, 8, 13, 12, 13, 16, 12, 12, 13, 12, 9, 13, 12, 13, 16, 1, 6, 8, 1, 9, 8, 13, 8, 13, 9, 13, 8, 16, 13, 8, 8, 1, 6, 0, 8, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
27	[ "The", "signaling", "molecule", "secreted", "by", "the", "hypothalamus", "is", "arginine", "vasopressin", "(", "AVP", ")", ",", "which", "binds", "to", "a", "specific", "protein", "on", "the", "surface", "of", "kidney", "cells", ",", "AVP", "receptor", "(", "AVPR2", ")", "." ]	[ 6, 8, 8, 16, 1, 6, 8, 3, 8, 8, 13, 12, 13, 13, 11, 16, 1, 6, 0, 8, 1, 6, 8, 1, 8, 8, 13, 12, 8, 13, 12, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0 ]
28	[ "The", "results", "described", "above", "show", "that", "membrane", "-", "tethered", "δ", "-", "ACTX", "-", "Hv1a", "expression", "in", "PDF", "-", "secreting", "LNVs", "induces", "a", "phase", "-", "advance", "of", "both", "sLNV", "PDF", "secretion", "rhythms", "and", "morning", "anticipatory", "locomotor", "behavior", "in", "LD", ",", "and", "disrupts", "free", "-", "running", "locomotor", "rhythms", "in", "DD", ".", "In", "order", "to", "determine", "the", "relationship", "between", "these", "phenotypes", "and", "cellular", "transcriptional", "feedback", "oscillation", ",", "par", "domain", "protein", "1", "(", "PDP1", ")", "clock", "protein", "levels", "were", "assayed", "in", "the", "sLNV", ",", "dorsal", "lateral", "neuron", "(", "LND", ")", ",", "dorsal", "neuron", "(", "DN)1", ",", "and", "DN2", "neurons", "of", "flies", "expressing", "membrane", "-", "tethered", "δ", "-", "ACTX", "-", "Hv1a", "in", "the", "LNVs", ".", "PDP1", "is", "an", "oscillating", "transcription", "factor", "that", "has", "been", "implicated", "in", "a", "second", "interlocking", "circadian", "transcriptional", "feedback", "loop", "[", "8", "]", "." ]	[ 6, 8, 16, 2, 16, 11, 8, 13, 16, 13, 13, 8, 13, 12, 8, 1, 12, 13, 16, 12, 16, 6, 8, 13, 8, 1, 5, 12, 12, 8, 8, 5, 0, 0, 0, 8, 1, 12, 13, 5, 16, 2, 13, 16, 0, 8, 1, 12, 13, 1, 8, 10, 16, 6, 8, 1, 6, 8, 5, 0, 0, 8, 8, 13, 12, 8, 8, 9, 13, 12, 13, 8, 8, 8, 3, 16, 1, 6, 12, 13, 0, 0, 8, 13, 12, 13, 13, 0, 8, 13, 12, 13, 5, 8, 8, 1, 8, 16, 8, 13, 16, 13, 13, 8, 13, 12, 1, 6, 12, 13, 12, 3, 6, 16, 8, 8, 11, 3, 3, 16, 1, 6, 0, 16, 0, 0, 8, 8, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 3, 4, 4, 0, 1, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
29	[ "Mosquitoes", "were", "allowed", "to", "feed", "on", "a", "human", ",", "then", ",", "24", "h", "after", "the", "blood", "feeding", ",", "gut", "sections", "were", "prepared", "for", "histology", "and", "stained", "with", "hematoxylin", "and", "eosin", "(", "HE", ")", ".", "Compared", "to", "non", "-", "transgenic", "midguts", "which", "were", "filled", "with", "intact", "erythrocytes", "(", "Figure", "5A", "and", "5C", ")", ",", "erythrocytes", "in", "the", "midgut", "of", "transgenic", "mosquito", "were", "extensively", "hemolyzed", "(", "Figure", "5B", "and", "5D", ")", ".", "Lymphocytes", "were", "clearly", "contrasted", "in", "the", "midgut", "of", "transgenic", "mosquito", "(", "Figure", "5D", ")", ",", "but", "not", "amongst", "the", "intact", "erythrocytes", "in", "the", "midgut", "of", "non", "-", "transgenic", "mosquito", "(", "Figure", "5C", ")", ".", "These", "results", "are", "consistent", "with", "the", "data", "shown", "in", "Figure", "3C", ",", "where", "the", "secretion", "of", "CEL", "-", "III", "into", "the", "midgut", "lumen", "caused", "effective", "hemolysis", "." ]	[ 8, 3, 16, 1, 16, 1, 6, 8, 13, 2, 13, 9, 8, 1, 6, 8, 8, 13, 8, 8, 3, 16, 1, 8, 5, 16, 1, 8, 5, 8, 13, 12, 13, 13, 16, 1, 0, 13, 0, 8, 11, 3, 16, 1, 0, 8, 13, 12, 9, 5, 9, 13, 13, 8, 1, 6, 8, 1, 0, 8, 3, 2, 16, 13, 12, 9, 5, 9, 13, 13, 8, 3, 2, 16, 1, 6, 8, 1, 0, 8, 13, 12, 9, 13, 13, 5, 10, 1, 6, 0, 8, 1, 6, 8, 1, 0, 13, 0, 8, 13, 12, 9, 13, 13, 6, 8, 3, 0, 1, 6, 8, 16, 1, 12, 9, 13, 14, 6, 8, 1, 8, 13, 9, 1, 6, 8, 8, 16, 0, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
30	[ "PM2.5", ",", "fine", "particulate", "matter", "(", "particulate", "matter", "with", "a", "diameter", "of", "<", "2.5", "μm", ")", "." ]	[ 12, 13, 0, 0, 8, 13, 0, 8, 1, 6, 8, 1, 1, 9, 8, 13, 13 ]	[ 1, 0, 3, 4, 4, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
31	[ "The", "glycosphingolipid", "isoglobotrihexosylceramide", ",", "or", "isogloboside", "3", "(", "iGb3", ")", ",", "is", "believed", "to", "be", "critical", "for", "natural", "killer", "T", "(", "NKT", ")", "cell", "development", "and", "self", "-", "recognition", "in", "mice", "and", "humans", "." ]	[ 6, 8, 8, 13, 5, 8, 9, 13, 12, 13, 13, 3, 16, 10, 3, 0, 1, 0, 8, 12, 13, 12, 13, 8, 8, 5, 8, 13, 8, 1, 8, 5, 8, 13 ]	[ 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
32	[ "Other", "authors", "[", "16,17", "]", "have", "proposed", "different", "methods", "for", "continuous", "nICP", "monitoring", "based", "on", "the", "waveform", "analysis", "of", "cerebral", "blood", "flow", "velocity", "from", "the", "middle", "cerebral", "artery", "(", "MCA", ")", "and", "arterial", "pressure", "." ]	[ 0, 8, 17, 17, 17, 3, 16, 0, 8, 1, 0, 12, 8, 16, 1, 6, 8, 8, 1, 0, 8, 8, 8, 1, 6, 0, 0, 8, 13, 12, 13, 5, 0, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0 ]
33	[ "The", "median", "age", "of", "women", "screened", "was", "25", "years", "(", "interquartile", "range", "[", "IQR", "]", ":", "22–29", ")", ",", "8", "%", "(", "105/1,271", ")", "were", "<", "20", "years", "old", ",", "and", "49", "%", "(", "627/1,271", ")", "were", "<", "24", "years", "old", ";", "82", "%", "(", "1,026/1,271", ")", "were", "married", ",", "and", "more", "than", "a", "third", "(", "427/1,271", ")", "of", "the", "women", "did", "not", "know", "their", "male", "partners", "’", "HIV", "status", "(", "Table", "1", ")", "." ]	[ 6, 0, 8, 1, 8, 16, 3, 9, 8, 13, 0, 8, 13, 12, 13, 13, 9, 13, 13, 9, 8, 13, 9, 13, 3, 1, 9, 8, 0, 13, 5, 9, 8, 13, 9, 13, 3, 1, 9, 8, 0, 13, 9, 8, 13, 9, 13, 3, 0, 13, 5, 0, 1, 6, 0, 13, 9, 13, 1, 6, 8, 3, 10, 16, 11, 0, 8, 13, 12, 8, 13, 12, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
34	[ "In", "a", "'", "status", "quo", "'", "setting", ",", "the", "VMMC", "program", "could", "be", "accompanied", "by", "continuations", "of", "recent", "trends", "in", "antiretroviral", "therapy", "(", "ART", ")", "scale", "-", "up", ",", "with", "constant", "coverage", "of", "prevention", "interventions", "and", "constant", "rates", "of", "risk", "and", "(", "non", "-", "VMMC", ")", "protective", "behaviors", "." ]	[ 1, 6, 13, 17, 17, 13, 8, 13, 6, 12, 8, 3, 3, 16, 1, 8, 1, 0, 8, 1, 0, 8, 13, 12, 13, 8, 0, 8, 13, 1, 0, 8, 1, 8, 8, 5, 0, 8, 1, 8, 5, 13, 0, 0, 12, 13, 0, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0 ]
35	[ "This", "study", "included", "31", "women", "who", "delivered", "small", "for", "gestational", "age", "(", "SGA", ")", "babies", "(", "SGA", ",", "≤10th", "percentile", ")", ",", "28", "who", "delivered", "large", "for", "gestational", "age", "(", "LGA", ")", "babies", "(", "≥90th", "percentile", ")", ",", "and", "31", "who", "delivered", "appropriate", "for", "gestational", "age", "(", "AGA", ")", "babies", "(", "controls", ",", ">", "10th", "to", "<", "90th", "percentile", ")", "." ]	[ 6, 8, 16, 9, 8, 11, 16, 0, 1, 0, 8, 13, 12, 13, 8, 13, 12, 13, 0, 8, 13, 13, 9, 11, 16, 0, 1, 0, 8, 13, 12, 13, 8, 13, 0, 8, 13, 13, 5, 9, 11, 16, 0, 1, 0, 8, 13, 12, 13, 8, 13, 8, 13, 9, 0, 10, 9, 9, 8, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
36	[ "Most", "strikingly", ",", "the", "strongly", "conserved", "proline", "(", "Pro", ")", "residue", "at", "site", "283", "in", "NP", "is", "rendered", "highly", "unfit", "by", "HSF1", "inhibition", "at", "febrile", "temperatures", "." ]	[ 2, 2, 13, 6, 2, 16, 8, 13, 12, 13, 8, 1, 8, 9, 1, 12, 3, 16, 2, 0, 1, 12, 8, 1, 0, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 3, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0 ]
37	[ "The", "microRNA", "(", "miRNA", ")", "miR-148a", "is", "a", "17-", "to", "25", "-", "nucleotide", "(", "nt)-long", "highly", "conserved", "single", "-", "stranded", "non", "-", "coding", "RNA", "regulating", "the", "expression", "of", "target", "genes", "at", "the", "post", "-", "transcriptional", "level", "by", "binding", "to", "the", "complementary", "sites", "of", "the", "mRNA", "of", "specific", "target", "genes", "[", "4", "]", "." ]	[ 6, 8, 13, 12, 13, 8, 3, 6, 9, 1, 9, 0, 8, 13, 0, 2, 0, 0, 0, 0, 0, 0, 0, 8, 16, 6, 8, 1, 8, 8, 1, 6, 0, 0, 0, 8, 1, 16, 1, 6, 0, 8, 1, 6, 8, 1, 0, 8, 8, 13, 9, 13, 13 ]	[ 0, 3, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
38	[ "While", "FGF", "primarily", "induces", "the", "Ras", "–", "Mitogen", "-", "Activated", "Protein", "Kinase", "(", "MAPK", ")", "axis", "to", "promote", "lens", "cell", "differentiation", ",", "PDGF", "preferentially", "stimulates", "Phosphoinositide", "3", "-", "kinase", "(", "PI3", ")", "to", "enhance", "Notch", "signaling", ",", "which", "is", "necessary", "for", "maintaining", "the", "lens", "progenitor", "cell", "pool", "." ]	[ 14, 12, 2, 16, 6, 12, 13, 12, 13, 12, 12, 12, 13, 12, 13, 8, 10, 16, 8, 8, 8, 13, 12, 2, 16, 8, 9, 13, 8, 13, 12, 13, 10, 16, 8, 8, 13, 11, 3, 0, 1, 16, 6, 8, 8, 8, 8, 13 ]	[ 0, 1, 0, 0, 0, 0, 0, 3, 4, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
39	[ "To", "begin", "to", "establish", "such", "links", "between", "genotype", "and", "growth", "phenotype", ",", "we", "developed", "a", "computer", "model", "for", "the", "intracellular", "growth", "of", "vesicular", "stomatitis", "virus", "(", "VSV", ")", ",", "a", "well", "-", "studied", ",", "nonsegmented", ",", "negative", "-", "stranded", "RNA", "virus", "." ]	[ 10, 16, 10, 16, 0, 8, 1, 8, 5, 8, 8, 13, 11, 16, 6, 8, 8, 1, 6, 0, 8, 1, 8, 8, 8, 13, 12, 13, 13, 6, 2, 13, 16, 13, 0, 13, 0, 13, 0, 8, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
40	[ "Legend", ":", "HCV", ":", "Chronic", "hepatitis", "C", ";", "DAA", ":", "Direct", "-", "acting", "antivirals", ";", "N", ":", "Sample", "size", ";", "comorbidities", ":", "Comorbidity", ";", "comedications", ":", "Comedication", "." ]	[ 8, 13, 12, 13, 0, 8, 8, 13, 12, 13, 2, 13, 16, 8, 13, 8, 13, 8, 8, 13, 8, 13, 8, 13, 8, 13, 8, 13 ]	[ 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 3, 4, 4, 4, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
41	[ "Time", "to", "ART", "initiation", "was", "estimated", "using", "cumulative", "incidence", "functions", "(", "CIFs", "):", "mortality", "and", "LTFU", "were", "considered", "competing", "events", "to", "ART", "initiation", "[", "9", "]", ",", "while", "those", "transferred", "out", "were", "right", "-", "censored", ",", "with", "the", "assumption", "that", "they", "remained", "in", "HIV", "care", "and", "had", "similar", "outcomes", "as", "patients", "still", "in", "observation", "." ]	[ 8, 1, 12, 8, 3, 16, 16, 0, 8, 8, 13, 12, 13, 8, 5, 12, 3, 16, 16, 8, 1, 12, 8, 13, 9, 13, 13, 14, 11, 16, 2, 3, 2, 13, 16, 13, 1, 6, 8, 14, 11, 16, 1, 12, 8, 5, 16, 0, 8, 1, 8, 2, 1, 8, 13 ]	[ 0, 0, 1, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
42	[ "FISH", ",", "fluorescence", "in", "situ", "hybridization", "." ]	[ 12, 13, 8, 1, 8, 8, 13 ]	[ 1, 0, 3, 4, 4, 4, 0 ]
43	[ "We", "included", "those", "with", "follow", "-", "up", "visits", "and", "pulmonary", "function", "tests", "(", "PFTs", ")", "available", "after", "hospitalization", "." ]	[ 11, 16, 11, 1, 16, 13, 1, 8, 5, 0, 8, 8, 13, 12, 13, 0, 1, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0 ]
44	[ "WT", ",", "wild", "type", ";", "TG", ",", "transgenic", ";", "TSA", ",", "total", "salvianolic", "acid", ";", "n", "=", "20", ",", "error", "bars", "represent", "SEM", ".", "", "p<0.05", ",", "", "*", "p<0.01", "versus", "WT", "control", "group", ";", "#", "p<0.05", ",", "#", "#", "p<0.01", "versus", "vehicle", "-", "treated", "APPswe", "/", "PS1dE9", "transgenic", "group", "." ]	[ 12, 13, 0, 8, 13, 12, 13, 0, 13, 12, 13, 0, 0, 8, 13, 8, 15, 9, 13, 8, 8, 16, 8, 13, 8, 9, 13, 8, 8, 9, 1, 12, 8, 8, 13, 15, 9, 13, 15, 15, 9, 1, 8, 13, 16, 12, 15, 12, 0, 8, 13 ]	[ 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 3, 4, 4, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
45	[ "M", ",", "mirror", ";", "P", ",", "pinhole", ";", "λ/2", ",", "λ/2", "plate", ";", "PBS", ",", "polarizing", "beam", "splitter", ";", "EOM", ",", "electro", "optical", "modulator", ";", "S", ",", "shutter", ";", "F", ",", "filter", ";", "Pol", ",", "polarizer", ";", "DC", ",", "dichroic", "mirror", "." ]	[ 12, 13, 8, 13, 8, 13, 8, 13, 9, 13, 9, 8, 13, 12, 13, 16, 8, 8, 13, 12, 13, 0, 0, 8, 13, 8, 13, 8, 13, 8, 13, 8, 13, 12, 13, 8, 13, 8, 13, 0, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 3, 4, 4, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
46	[ "In", "the", "third", "group", ",", "the", "variables", "related", "to", "resuming", "dialysis", "were", ":", "Charlson", "comorbidity", "index", "[", "18", "]", ";", "dialysis", "modality", "and", "access", ",", "such", "as", "arterio", "-", "venous", "(", "AV", ")", "fistula", "as", "access", "for", "hemodialysis", ",", "venous", "catheters", ",", "or", "peritoneal", "catheters", "for", "peritoneal", "dialysis", ";", "and", "biochemical", "parameters", "such", "as", "creatinine", ",", "hemoglobin", ",", "urea", ",", "potassium", ",", "ionic", "calcium", ",", "phosphorus", ",", "parathormone", "(", "PTH", ")", ",", "serum", "albumin", "and", "C", "-", "reactive", "protein", "." ]	[ 1, 6, 0, 8, 13, 6, 8, 16, 1, 16, 8, 3, 13, 12, 8, 8, 13, 9, 13, 13, 8, 8, 5, 8, 13, 0, 1, 0, 13, 0, 13, 12, 13, 8, 1, 8, 1, 8, 13, 0, 8, 13, 5, 0, 8, 1, 0, 8, 13, 5, 0, 8, 0, 1, 8, 13, 8, 13, 8, 13, 8, 13, 0, 8, 13, 8, 13, 8, 13, 12, 13, 13, 8, 8, 5, 8, 13, 0, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
47	[ "HPD", ",", "human", "population", "density", "." ]	[ 12, 13, 0, 8, 8, 13 ]	[ 1, 0, 3, 4, 4, 0 ]
48	[ "PD", ";", "the", "ERK", "inhibitor", "PD98059", ".", "β", "-", "Actin", "served", "as", "an", "input", "control", ".", "(", "G", ")", "Levels", "of", "inflammatory", "response", "markers", "(", "NF", "-", "κB", "p65", "activity", "and", "TNFα", "and", "IL-8", "production", ",", "by", "ELISA", ")", "in", "control", "medium", "-", "treated", "or", "CSE", "-", "exposed", "H292", "cells", ",", "pretreated", "with", "either", "Csn-B", "(", "10", "μM", ")", "or", "Veh", ".", "(", "left", "panel", ")", "Spectrophotometric", "reading", "value", "(", "A450", ")", "represents", "NF", "-", "κB", "p65", "activity", ".", "(", "middle", "and", "right", "panels", ")", "The", "levels", "of", "cytokine", "and", "chemokine", "are", "shown", "as", "protein", "concentrations", "(", "pg", ")", "in", "ml", "of", "cell", "culture", "medium", "." ]	[ 12, 13, 6, 12, 8, 12, 13, 13, 13, 12, 16, 1, 6, 8, 8, 13, 13, 8, 13, 8, 1, 0, 8, 8, 13, 8, 13, 8, 8, 8, 5, 12, 5, 12, 8, 13, 1, 12, 13, 1, 8, 8, 13, 16, 5, 12, 13, 16, 12, 8, 13, 16, 1, 5, 12, 13, 9, 8, 13, 5, 12, 13, 13, 0, 8, 13, 0, 8, 8, 13, 8, 13, 16, 8, 13, 8, 8, 8, 13, 13, 0, 5, 0, 8, 13, 6, 8, 1, 8, 5, 8, 3, 16, 1, 8, 8, 13, 8, 13, 1, 8, 1, 8, 8, 8, 13 ]	[ 1, 0, 0, 0, 0, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
49	[ "The", "EP3", "receptor", "as", "a", "PGE2", "receptor", ",", "same", "as", "the", "other", "types", "of", "EP", "receptor", "(", "EP1", "-", "2", "and", "EP4", ")", ",", "is", "a", "G", "-", "protein", "-", "coupled", "receptor", "(", "GPCR", ")", "[", "23", "]", "and", "specifically", "contributes", "to", "the", "cough", "through", "activating", "airway", "sensory", "nerves", "[", "24", ",", "25", "]", "." ]	[ 6, 8, 8, 1, 6, 12, 8, 13, 0, 1, 6, 0, 8, 1, 12, 8, 13, 8, 13, 9, 5, 12, 13, 13, 3, 6, 12, 13, 8, 13, 16, 8, 13, 12, 13, 17, 9, 13, 5, 2, 16, 1, 6, 8, 1, 16, 8, 0, 8, 17, 9, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
50	[ "G6PD", ",", "glucose-6", "-", "phosphate", "dehydrogenase", "." ]	[ 12, 13, 8, 13, 8, 8, 13 ]	[ 1, 0, 3, 4, 4, 4, 0 ]
51	[ "Partial", "least", "squares", "regression", "(", "PLSR", ")", ",", "a", "technique", "previously", "shown", "to", "be", "useful", "for", "the", "creation", "of", "signal", "–", "response", "models", "based", "on", "highly", "dimensional", "datasets", ",", "was", "used", "to", "correlate", "phosphorylation", "events", "to", "both", "migration", "and", "proliferation", "[", "10", "]", "." ]	[ 0, 0, 8, 8, 13, 12, 13, 13, 6, 8, 2, 16, 1, 3, 0, 1, 6, 8, 1, 8, 13, 8, 8, 16, 1, 2, 0, 8, 13, 3, 16, 1, 16, 8, 8, 1, 5, 8, 5, 8, 13, 9, 13, 13 ]	[ 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
52	[ "Copper", "(", "Cu", ")", "and", "zinc", "(", "Zn", ")", "are", "essential", "nutritional", "metals", "required", "for", "the", "function", "of", "numerous", "enzymatic", "molecules", "active", "in", "human", "cell", "metabolic", "pathways", "." ]	[ 8, 13, 12, 13, 5, 8, 13, 12, 13, 3, 0, 0, 8, 16, 1, 6, 8, 1, 0, 0, 8, 0, 1, 0, 8, 0, 8, 13 ]	[ 3, 0, 1, 0, 0, 3, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
53	[ "RNase", "T", "showed", "in", "in", "vitro", "experiments", "that", "it", "can", "serve", "as", "a", "downstream", "exonuclease", "of", "Endonuclease", "V", "(", "alternative", "EndoV)–mediated", "base", "excision", "repair", "(", "AER", ")", "[", "33", "]", "." ]	[ 8, 8, 16, 1, 1, 0, 8, 14, 11, 3, 16, 1, 6, 0, 8, 1, 8, 8, 13, 0, 12, 8, 8, 8, 13, 12, 13, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 3, 1, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0 ]
54	[ "Interestingly", ",", "incubation", "of", "parasites", "in", "the", "presence", "of", "0.5", "μM", "Cytochalasin", "D", "(", "CD", ";", "a", "drug", "used", "to", "disrupt", "F", "-", "actin", ")", "did", "not", "result", "in", "significant", "reduction", "of", "bead", "translocation", "(", "Fig", "1", "G", ")", ",", "confirming", "that", "retrograde", "membrane", "flow", "can", "occur", "in", "the", "absence", "of", "a", "functional", "acto", "-", "myosin", "system", ",", "as", "reported", "previously", "[", "5", "]", "." ]	[ 2, 13, 8, 1, 8, 1, 6, 8, 1, 9, 8, 8, 12, 13, 12, 13, 6, 8, 16, 10, 16, 8, 0, 8, 13, 3, 10, 16, 1, 0, 8, 1, 8, 8, 13, 8, 9, 8, 13, 13, 16, 14, 0, 8, 8, 3, 16, 1, 6, 8, 1, 6, 0, 8, 0, 8, 8, 13, 14, 16, 2, 17, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
55	[ "Focal", "increases", "in", "fMRI", "-", "activity", "were", "observed", "in", "area", "AIP", ",", "consisting", "of", "both", "aAIP", "and", "pAIP", "(", "Fig", ".", "2A", ",", "left", "column", ",", "first", "and", "second", "row", ")", ",", "in", "the", "anterior", "lateral", "bank", "of", "the", "IPS", ".", "Furthermore", ",", "aAIP", "-", "EM", "elicited", "significant", "fMRI", "activations", "in", "the", "medial", "bank", "of", "the", "IPS", "(", "area", "MIP", ")", ",", "in", "area", "PFG", "in", "the", "rostral", "portion", "of", "the", "inferior", "parietal", "lobule", ",", "in", "the", "most", "anterior", "sector", "of", "somatosensory", "area", "S2", "and", "in", "ventral", "premotor", "cortex", "(", "PMv", ",", "or", "area", "F5", ";", "Fig", ".", "2A", ",", "left", "column", ",", "rows", "2–5", ")", "." ]	[ 0, 8, 1, 12, 13, 8, 3, 16, 1, 8, 12, 13, 16, 1, 6, 12, 5, 12, 13, 8, 13, 9, 13, 0, 8, 13, 0, 5, 0, 8, 13, 13, 1, 6, 0, 0, 8, 1, 6, 12, 13, 2, 13, 12, 13, 12, 16, 0, 12, 8, 1, 6, 0, 8, 1, 6, 12, 13, 8, 12, 13, 13, 1, 8, 12, 1, 6, 0, 8, 1, 6, 0, 0, 8, 13, 1, 6, 2, 0, 8, 1, 0, 8, 12, 5, 1, 0, 0, 8, 13, 12, 13, 5, 8, 9, 13, 8, 13, 9, 13, 0, 8, 13, 8, 9, 13, 13 ]	[ 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
56	[ "Here", ",", "the", "high", "level", "of", "HR", "is", "due", "to", "the", "programmed", "formation", "of", "a", "large", "number", "of", "DNA", "double", "-", "strand", "breaks", "(", "DSBs", ")", "[", "4", "]", "." ]	[ 2, 13, 6, 0, 8, 1, 12, 3, 0, 1, 6, 16, 8, 1, 6, 0, 8, 1, 8, 0, 13, 8, 8, 13, 12, 13, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0 ]
57	[ "Natural", "killer", "T", "(", "NKT", ")", "cell", "development", "depends", "on", "recognition", "of", "self", "-", "glycolipids", "via", "their", "semi", "-", "invariant", "Vα14i", "-", "TCR", ".", "However", ",", "to", "what", "extent", "TCR", "-", "mediated", "signals", "determine", "identity", "and", "function", "of", "mature", "NKT", "cells", "remains", "incompletely", "understood", "." ]	[ 0, 8, 12, 13, 12, 13, 8, 8, 16, 1, 8, 1, 8, 13, 8, 1, 11, 0, 13, 0, 8, 13, 12, 13, 2, 13, 10, 6, 8, 12, 13, 16, 8, 16, 8, 5, 8, 1, 0, 12, 8, 3, 2, 16, 13 ]	[ 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0 ]
58	[ "Inhalation", "injury", "predisposes", "these", "patients", "to", "respiratory", "failure", ",", "acute", "respiratory", "distress", "syndrome", "(", "ARDS", ")", ",", "and", "pneumonia", "." ]	[ 8, 8, 16, 6, 8, 1, 0, 8, 13, 0, 0, 8, 8, 13, 12, 13, 13, 5, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0 ]
59	[ "In", "support", "of", "this", "idea", "we", "found", "that", "a", "bacterially", "expressed", "p180", "lysine", "-", "rich", "region", ",", "fused", "to", "glutathione", "s", "-", "transferase", "(", "GST", "-", "p180", "-", "Lys", ";", "Figure", "7A", ")", ",", "could", "form", "a", "complex", "with", "a", "32P", "-", "labeled", "RNA", "derived", "from", "the", "human", "insulin", "SSCR", "(", "Figure", "7B", ")", ".", "In", "contrast", ",", "no", "complex", "was", "formed", "between", "this", "RNA", "and", "a", "control", "protein", ",", "GST", "-", "Ran", "(", "Figure", "7A", "–", "B", ")", ".", "By", "varying", "the", "amount", "of", "protein", "in", "our", "binding", "assay", ",", "we", "estimate", "that", "the", "GST", "-", "p180", "-", "Lys", "binds", "to", "RNA", "with", "an", "affinity", "of", "about", "0.8", "µM." ]	[ 1, 8, 1, 6, 8, 11, 16, 14, 6, 2, 16, 8, 8, 13, 0, 8, 13, 16, 1, 8, 8, 13, 8, 13, 12, 13, 8, 13, 12, 13, 12, 9, 13, 13, 3, 16, 6, 8, 1, 6, 8, 13, 16, 8, 16, 1, 6, 0, 8, 12, 13, 12, 9, 13, 13, 1, 8, 13, 6, 8, 3, 16, 1, 6, 8, 5, 6, 8, 8, 13, 12, 13, 12, 13, 12, 9, 13, 8, 13, 13, 1, 16, 6, 8, 1, 8, 1, 11, 16, 8, 13, 11, 16, 14, 6, 12, 13, 8, 13, 12, 16, 1, 8, 1, 6, 8, 1, 1, 9, 8 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
60	[ "Here", "we", "report", "the", "modulation", "of", "the", "structure", "/", "function", "of", "recombinant", "Ace", "by", "small", "molecule", "calcium", "-", "activated", "chloride", "channel", "(", "CaCC", ")", "inhibitors", ",", "namely", "CaCCinh", "-", "A01", ",", "digallic", "acid", "(", "DGA", ")", "and", "tannic", "acid", "." ]	[ 2, 11, 16, 6, 8, 1, 6, 8, 15, 8, 1, 0, 12, 1, 0, 8, 8, 13, 16, 8, 8, 13, 12, 13, 8, 13, 2, 12, 13, 12, 13, 0, 8, 13, 12, 13, 5, 8, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 3, 4, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0 ]
61	[ "IMD", ",", "Index", "of", "Multiple", "Deprivation", ",", "derived", "from", "the", "Lower", "Super", "Output", "Area", "of", "the", "patient", "’s", "home", "address", ";", "IQR", ",", "interquartile", "range", "." ]	[ 12, 13, 12, 1, 0, 8, 13, 16, 1, 6, 12, 12, 12, 12, 1, 6, 8, 10, 8, 8, 13, 12, 13, 0, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 3, 4, 0 ]
62	[ "Analyzed", "parameter", "were", "immunoreactive", "area", "(", "IR", ")", "in", "percent", "of", "the", "ROI", "area", "and", "summarized", "object", "intensity", "in", "a.u./mm2", "." ]	[ 16, 8, 3, 0, 8, 13, 12, 13, 1, 8, 1, 6, 8, 8, 5, 16, 8, 8, 1, 17, 13 ]	[ 0, 0, 0, 3, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
63	[ "Bovine", "serum", "albumin", "(", "BSA", ")", "medium", ",", "containing", "no", "peptides", ",", "was", "used", "as", "a", "negative", "control", "." ]	[ 0, 8, 8, 13, 12, 13, 8, 13, 16, 6, 8, 13, 3, 16, 1, 6, 0, 8, 13 ]	[ 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
64	[ "Recently", ",", "it", "has", "been", "shown", "that", "PD-L1", "intracytoplasmic", "tail", "can", "trigger", "a", "signal", "cascade", "that", "make", "cancer", "cells", "resistant", "to", "interferon", "(", "IFN)-mediated", "cytotoxicity", "through", "a", "STAT3", "/", "caspase-7", "-", "dependent", "pathway", "[", "16", "]", "." ]	[ 2, 13, 11, 3, 3, 16, 11, 12, 0, 8, 3, 16, 6, 8, 8, 11, 16, 8, 8, 0, 1, 8, 13, 12, 8, 1, 6, 8, 15, 8, 13, 0, 8, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
65	[ "Their", "transcripts", "were", "generally", "classified", "into", "two", "groups", "including", "long", "non", "-", "coding", "RNAs", "(", "longer", "than", "200", "nt", ")", "and", "small", "RNAs", "(", "sRNAs", ",", "shorter", "than", "200", "nt", ")", "." ]	[ 11, 8, 3, 2, 16, 1, 9, 8, 16, 0, 0, 0, 0, 8, 13, 0, 1, 9, 8, 13, 5, 0, 8, 13, 12, 13, 0, 1, 9, 8, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0 ]
66	[ "The", "underlying", "data", "can", "be", "found", "in", "S1", "Data", ".", ";", "eFSGM", ",", "extended", "FSGM", "FSGM", ";", "FBA", ",", "feature", "-", "based", "attention", ";", "HR", ",", "hit", "rate", ";", "RT", ",", "reaction", "time", "." ]	[ 6, 16, 8, 3, 3, 16, 1, 12, 12, 13, 13, 12, 13, 0, 12, 12, 13, 12, 13, 8, 13, 16, 8, 13, 12, 13, 8, 8, 13, 12, 13, 8, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 3, 4, 1, 0, 1, 0, 3, 4, 4, 4, 0, 1, 0, 3, 4, 0, 1, 0, 3, 4, 0 ]
67	[ "Results", "of", "logistic", "regression", "models", "are", "presented", "using", "adjusted", "Odds", "Ratio", "(", "aOR", ")", "and", "95", "%", "Confidence", "Interval", "(", "95", ")", ".", "To", "handle", "missing", "data", "of", "two", "covariates", ",", "multivariate", "logistic", "regression", "models", "were", "performed", "using", "multiple", "imputation", "[", "45,46", "]", "." ]	[ 8, 1, 0, 8, 8, 3, 16, 16, 0, 8, 12, 13, 12, 13, 5, 9, 8, 12, 8, 13, 12, 13, 13, 10, 16, 16, 8, 1, 9, 8, 13, 0, 0, 8, 8, 3, 16, 16, 0, 8, 17, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
68	[ "F", "-", "actin", "induction", "was", "plotted", "as", "mean", "±", "standard", "error", "of", "the", "mean", "(", "SEM", ")", ".", "n", "=", "3", ".", "", "p", "≤", "0.05", ",", "", "", "", "p", "≤", "0.001", ".", "(", "D", ")", "Time", "-", "lapse", "total", "internal", "reflection", "fluorescence", "microscopy", "(", "TIRFM", ")", "of", "speckle", "mCherry", "-", "β", "-", "actin", "in", "eNOS", "and", "G2A", "T", "cells", ",", "stimulated", "on", "CD3", "Ab", "-", "coated", "chambers", "." ]	[ 8, 13, 8, 8, 3, 16, 1, 8, 15, 0, 8, 1, 6, 8, 13, 12, 13, 13, 8, 15, 9, 13, 13, 8, 13, 9, 13, 13, 13, 13, 8, 13, 9, 13, 13, 17, 13, 8, 13, 8, 0, 0, 8, 8, 8, 13, 12, 13, 1, 8, 8, 13, 13, 13, 8, 1, 12, 5, 8, 8, 8, 13, 16, 1, 12, 12, 13, 16, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
69	[ "Free", "fatty", "acid", "(", "FA", ")", "and", "polar", "lipid", "species", "were", "determined", "in", "flowers", "and", "caulinary", "leaves", "of", "7", "-", "week", "-", "old", ",", "mature", "flowering", "plants", "." ]	[ 0, 0, 8, 13, 12, 13, 5, 0, 8, 8, 3, 16, 1, 8, 5, 0, 8, 1, 9, 13, 8, 13, 0, 13, 0, 16, 8, 13 ]	[ 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
70	[ "The", "substances", "which", "mainly", "contributed", "to", "Ozone", "layer", "depletion", "(", "OLD", ")", "were", "Methane", ",", "bromotrifluoro-", ",", "Halon", "1301", "(", "7.16E-06", "kg", "CFC-11", "eq", ")", "and", "Methane", ",", "trichlorofluoro", "CFC-11", "(", "7.28559E-11", "kg", "CFC-11", "eq", ")", "." ]	[ 6, 8, 11, 2, 16, 1, 12, 8, 8, 13, 12, 13, 3, 12, 13, 8, 13, 12, 9, 13, 9, 8, 8, 8, 13, 5, 12, 13, 8, 8, 13, 9, 8, 8, 8, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
71	[ "There", "is", "an", "increasing", "expectation", "that", "CHWs", "will", "participate", "in", "disease", "surveillance", "and", "data", "collection", ",", "diagnosis", "and", "referral", "for", "care", ",", "and", "antiretroviral", "therapy", "(", "ART", ")", "provision", "[", "10", "]", "." ]	[ 11, 16, 6, 16, 8, 14, 12, 3, 16, 1, 8, 8, 5, 8, 8, 13, 8, 5, 8, 1, 8, 13, 5, 0, 8, 13, 12, 13, 8, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0 ]
72	[ "(", "A", ")", "Trimethoprim", "+", "sulfamethizole", ".", "(", "B", ")", "Trimethoprim", "+", "AZT", ".", "Synergistic", "fractional", "inhibitory", "concentration", "index", "(", "FICI", ")", "values", "(", "≤0.5", ")", "are", "marked", "with", "yellow", "bars", ",", "and", "nonsynergistic", "(", "FICI", ">", "0.5", ")", "FICI", "values", "are", "marked", "with", "blue", "bars", "." ]	[ 13, 17, 13, 8, 15, 8, 13, 13, 17, 13, 8, 15, 12, 13, 0, 0, 0, 8, 8, 13, 12, 13, 8, 13, 9, 13, 3, 16, 1, 0, 8, 13, 5, 0, 13, 12, 15, 9, 13, 12, 8, 3, 16, 1, 0, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0 ]
73	[ "However", ",", "Zbtb7a", "is", "not", "restricted", "to", "NFκB", "target", "promoters", ",", "and", "indeed", ",", "a", "large", "fraction", "of", "all", "genomic", "promoters", "are", "associated", "with", "overlapping", "—", "or", "nearby", "—", "Zbtb7a", "binding", "(", "up", "to", "17", "%", "or", "41", "%", ",", "respectively", ",", "of", "all", "promoters", "in", "fibroblasts", ";", "Fig", "2D", ")", ",", "with", "a", "preference", "for", "guanine", "-", "cytosine", "(", "GC)-rich", "and", "CpG", "island", "(", "CGI)-containing", "promoters", "(", "S2H", "and", "S2I", "Fig", ")", "." ]	[ 2, 13, 8, 3, 10, 16, 10, 12, 8, 8, 13, 5, 2, 13, 6, 0, 8, 1, 6, 0, 8, 3, 16, 1, 16, 13, 5, 0, 13, 8, 8, 13, 1, 10, 9, 13, 5, 9, 13, 13, 2, 13, 1, 6, 8, 1, 8, 13, 12, 9, 13, 13, 1, 6, 8, 1, 8, 13, 8, 13, 12, 5, 8, 8, 13, 12, 8, 13, 12, 5, 12, 12, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0 ]
74	[ "LUSC", "(", "lung", "squamous", "cell", "carcinoma", ")" ]	[ 12, 13, 8, 0, 8, 8, 13 ]	[ 1, 0, 3, 4, 4, 4, 0 ]
75	[ "Based", "on", "observations", "in", "Drosophila", "[", "5", "]", ",", "we", "set", "out", "to", "assess", "the", "role", "of", "stress", "-", "response", "pathways", ",", "particularly", "of", "heat", "shock", "protein", "90", "(", "Hsp90", ")", "function", ",", "in", "phenotype", "modification", ",", "using", "zebrafish", "as", "a", "vertebrate", "model", "." ]	[ 16, 1, 8, 1, 12, 13, 9, 13, 13, 11, 16, 1, 10, 16, 6, 8, 1, 8, 13, 8, 8, 13, 2, 1, 8, 8, 8, 9, 13, 12, 13, 8, 13, 1, 8, 8, 13, 16, 8, 1, 6, 0, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
76	[ "Driving", "simulator", "(", "DS", ")", "systems", "have", "advantages", "in", "controlling", "traffic-", "and", "automobile", "-", "related", "conditions", "[", "1,13,14", "]", "." ]	[ 16, 8, 13, 12, 13, 8, 16, 8, 1, 16, 8, 5, 8, 13, 16, 8, 13, 9, 13, 13 ]	[ 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
77	[ "We", "assumed", "a", "50", "%", "proportion", ",", "80", "%", "power", ",", "95", "%", "confidence", "interval", "(", "CI", ")", "and", "5", "%", "precision", "." ]	[ 11, 16, 6, 9, 8, 8, 13, 9, 8, 8, 13, 9, 8, 8, 8, 13, 12, 13, 5, 9, 8, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0 ]
78	[ "All", "known", "AP", "endonucleases", "are", "grouped", "in", "two", "distinct", "superfamilies", "based", "on", "their", "structural", "and", "sequence", "similarity", "to", "either", "Escherichia", "coli", "exonuclease", "III", "(", "Xth", ";", "Endonuclease", "—", "Exonuclease", "—", "Phosphatase", "superfamily", ",", "or", "EEP", ")", "or", "endonuclease", "IV", "(", "Nfo", ")", "[", "10", "]", "." ]	[ 6, 16, 12, 8, 3, 16, 1, 9, 0, 8, 16, 1, 11, 0, 5, 8, 8, 1, 5, 12, 12, 8, 9, 13, 12, 13, 8, 13, 8, 13, 8, 8, 13, 5, 12, 13, 5, 8, 9, 13, 12, 13, 13, 9, 13, 13 ]	[ 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 3, 4, 4, 4, 4, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
79	[ "Arm", ",", "Armadillo", ";", "bGal", ",", "beta", "-", "galactosidase", ";", "Cyt", "-Arm", ",", "Cytoplasm", "-", "Armadillo", ";", "GBSC", ",", "glioblastoma", "multiforme", "stem", "-", "like", "cell", ";", "GFP", ",", "green", "fluorescent", "protein", ";", "igl", ",", "igloo", ";", "myrRFP", ",", "myristoilated", "Red", "Fluorescent", "Protein", ";", "nkd", ",", "-lacZnkd", ",", "transcriptional", "beta", "-", "galactosidase", "reporter", "of", "naked", "gene", "NLGN3", ";", "NMRI", ",", "Naval", "Medical", "Research", "Institute", "." ]	[ 12, 13, 12, 13, 12, 13, 8, 13, 8, 13, 12, 12, 13, 8, 13, 12, 13, 12, 13, 8, 0, 8, 13, 0, 8, 13, 12, 13, 0, 0, 8, 13, 12, 13, 8, 13, 12, 13, 12, 12, 12, 12, 13, 12, 13, 12, 13, 0, 8, 13, 8, 8, 1, 0, 8, 12, 13, 12, 13, 12, 12, 12, 12, 13 ]	[ 1, 0, 3, 0, 1, 0, 3, 4, 4, 0, 1, 1, 0, 0, 0, 3, 0, 1, 0, 3, 4, 4, 4, 4, 4, 0, 1, 0, 3, 4, 4, 0, 1, 0, 3, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 0, 0, 3, 4, 4, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
80	[ "Very", "-", "long", "-", "chain", "fatty", "acid", "(", "VLCFA", ")", "accumulation", "has", "long", "been", "suggested", "as", "a", "major", "disease", "-", "mediating", "factor", ",", "although", "the", "exact", "pathological", "consequences", "are", "unclear", "." ]	[ 2, 13, 2, 13, 8, 0, 8, 13, 12, 13, 8, 3, 2, 3, 16, 1, 6, 0, 8, 13, 16, 8, 13, 14, 6, 0, 0, 8, 3, 0, 13 ]	[ 3, 4, 4, 4, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
81	[ "Unexpectedly", ",", "we", "found", "that", "Notch1", "-", "expressing", "cells", "invariably", "lacked", "the", "expression", "of", "ERα", "and", "PR", "(", "Fig", ".", "2F", ",", "G", ")", ",", "and", "we", "confirmed", "these", "results", "by", "quantitative", "Real", "Time", "Polymerase", "Chain", "Reaction", "(", "qRT", ")", "in", "sorted", "-PCRGFP", "-", "labeled", "cells", "(", "S3B", ",", "C", "Fig", ".", ")", "." ]	[ 2, 13, 11, 16, 14, 8, 13, 16, 8, 2, 16, 6, 8, 1, 12, 5, 12, 13, 12, 13, 9, 13, 8, 13, 13, 5, 11, 16, 6, 8, 1, 0, 0, 8, 12, 12, 12, 13, 12, 13, 1, 0, 12, 13, 16, 8, 13, 12, 13, 12, 12, 13, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 4, 4, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
82	[ "In", "RSV", "infected", "animals", "treated", "with", "EGY-2", ",", "alveolar", "macrophages", "(", "AM", ")", "in", "the", "high", "dose", "group", "showed", "a", "markedly", "enhanced", "phagocytic", "function", "at", "the", "early", "phase", "of", "infection", ",", "as", "both", "the", "number", "of", "phagocytic", "AM", "as", "well", "as", "their", "phagocytic", "activity", "was", "significantly", "enhanced", "compared", "to", "untreated", "animals", "on", "day", "1", "p.i", ".", "(", "Fig", "4A", "and", "4B", ",", "respectively", ")", "." ]	[ 1, 12, 16, 8, 16, 1, 12, 13, 0, 8, 13, 12, 13, 1, 6, 0, 8, 8, 16, 6, 2, 16, 0, 8, 1, 6, 0, 8, 1, 8, 13, 1, 5, 6, 8, 1, 0, 12, 1, 2, 1, 11, 0, 8, 3, 2, 16, 16, 1, 0, 8, 1, 8, 9, 12, 13, 13, 8, 9, 5, 8, 13, 2, 13, 13 ]	[ 0, 1, 0, 0, 0, 0, 1, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
83	[ "Finally", ",", "as", "a", "sensitivity", "analysis", ",", "we", "constructed", "five", "different", "genetic", "pigmentation", "scores", ",", "one", "for", "each", "pigmentation", "trait", "(", "eye", "color", ",", "hair", "color", ",", "skin", "phototype", ",", "and", "the", "presence", "of", "freckles", "and", "tanning", ")", ",", "from", "our", "data", "(", "S2", "Table", ")", "we", "analyzed", "their", "relationship", "with", "cancer", "in", "the", "same", "way", "we", "have", "described", "for", "the", "GPS", "." ]	[ 2, 13, 1, 6, 8, 8, 13, 11, 16, 9, 0, 0, 8, 8, 13, 9, 1, 6, 8, 8, 13, 8, 8, 13, 8, 8, 13, 8, 8, 13, 5, 6, 8, 1, 8, 5, 8, 13, 13, 1, 11, 8, 13, 12, 12, 13, 11, 16, 11, 8, 1, 8, 1, 6, 0, 8, 11, 3, 16, 1, 6, 12, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0 ]
84	[ "SDQ", ",", "Strengths", "and", "Difficulties", "Questionnaire", "." ]	[ 12, 13, 8, 5, 8, 8, 13 ]	[ 1, 0, 3, 4, 4, 4, 0 ]
85	[ "In", "Drosophila", ",", "the", "family", "of", "gustatory", "receptors", "(", "Grs", ")", "is", "predicted", "to", "consist", "of", "68", "genes", "[", "4],[5", "]", "." ]	[ 1, 12, 13, 6, 8, 1, 0, 8, 13, 12, 13, 3, 16, 10, 16, 1, 9, 8, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
86	[ "DIC", ",", "differential", "interference", "contrast", ";", "SM", ",", "Sperm", "Medium", "." ]	[ 12, 13, 0, 8, 8, 13, 12, 13, 8, 8, 13 ]	[ 1, 0, 3, 4, 4, 0, 0, 0, 0, 0, 0 ]
87	[ "In", "October", "2018", ",", "we", "published", "a", "systematic", "review", "of", "clinical", "practice", "guidelines", "(", "CPG", ")", "that", "provide", "recommendations", "for", "the", "care", "and", "prevention", "of", "adverse", "events", "associated", "with", "vascular", "catheter", "in", "adults", "." ]	[ 1, 12, 9, 13, 11, 16, 6, 0, 8, 1, 0, 8, 8, 13, 12, 13, 11, 16, 8, 1, 6, 8, 5, 8, 1, 0, 8, 16, 1, 0, 8, 1, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
88	[ "Aptima", "HIV-1", "Aptima", "Quant", "Dx", "assay" ]	[ 12, 8, 12, 8, 8, 8 ]	[ 3, 4, 1, 4, 4, 4 ]
89	[ "Equation", "2", ":", "Where", "RMSE", "is", "root", "mean", "square", "error", ",", "Yi", "is", "ANN", "predicted", "values", ";", "yi", "is", "experimental", "values", ";", "n", "is", "number", "of", "predictions", "." ]	[ 8, 9, 13, 14, 12, 3, 8, 0, 0, 8, 13, 12, 3, 12, 16, 8, 13, 12, 3, 0, 8, 13, 8, 3, 8, 1, 8, 13 ]	[ 0, 0, 0, 0, 1, 0, 3, 4, 4, 4, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
90	[ "Various", "platforms", ",", "such", "as", "IHC", ",", "SS", ",", "pyrosequencing", "(", "PS", ")", ",", "and", "HRM", ",", "are", "available", "to", "analyze", "genetic", "mutation", "profiles", "in", "clinical", "tissue", "samples", "." ]	[ 0, 8, 13, 0, 1, 12, 13, 12, 13, 8, 13, 12, 13, 13, 5, 12, 13, 3, 0, 10, 16, 0, 8, 8, 1, 0, 8, 8, 13 ]	[ 0, 0, 0, 0, 0, 1, 0, 1, 0, 3, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
91	[ "One", "compound", "seemed", "a", "particularly", "promising", "candidate", "for", "this", "sort", "of", "approach", ":", "thiabendazole", "(", "TBZ", ")", ",", "which", "has", "been", "in", "clinical", "use", "as", "a", "systemic", "antifungal", "and", "deworming", "treatment", "for", "40", "years", "." ]	[ 9, 8, 16, 6, 2, 0, 8, 1, 6, 8, 1, 8, 13, 8, 13, 12, 13, 13, 11, 3, 3, 1, 0, 8, 1, 6, 0, 0, 5, 8, 8, 1, 9, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
92	[ "Though", "long", "endemic", "in", "the", "southeastern", "U.S.", ",", "raccoon", "rabies", "expanded", "rapidly", "along", "the", "eastern", "seaboard", "during", "the", "1980s", "and", "1990s", "from", "an", "initial", "focus", "along", "the", "West", "Virginia", "–", "Virginia", "border", ";", "the", "initial", "focus", "was", "linked", "to", "the", "long", "-", "distance", "translocation", "(", "LDT", ")", "of", "rabid", "animals", "from", "Florida", "[", "5", "]", "." ]	[ 14, 0, 0, 1, 6, 0, 12, 13, 8, 8, 16, 2, 1, 6, 0, 8, 1, 6, 8, 5, 8, 1, 6, 0, 8, 1, 6, 12, 12, 13, 12, 8, 13, 6, 0, 8, 3, 16, 1, 6, 0, 13, 8, 8, 13, 12, 13, 1, 0, 8, 1, 12, 13, 9, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
93	[ "(", "A", ")", "Two", "-", "dimensional", "representation", "of", "the", "mTufA", "5′", "UTR", ".", "The", "RNAfold", "algorithm", "predicted", "three", "structured", "regions", ":", "SR", "I", "(", "pink", ")", ",", "SR", "II", "(", "violet", ")", ",", "SR", "IIIa", "(", "yellow", ")", ",", "and", "SR", "IIIb", "(", "green", ")", "." ]	[ 13, 17, 13, 9, 13, 0, 8, 1, 6, 12, 9, 8, 13, 6, 0, 8, 16, 9, 16, 8, 13, 12, 8, 13, 8, 13, 13, 12, 12, 13, 0, 13, 13, 12, 8, 13, 0, 13, 13, 5, 12, 8, 13, 8, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0 ]
94	[ "However", ",", "in", "some", "studies", ",", "we", "investigated", "the", "effects", "of", "gp120", "on", "MDDC", "that", "were", "simultaneously", "induced", "to", "mature", "by", "other", "stimuli", ",", "notably", "lipopolysaccharide", "(", "LPS", ")", "." ]	[ 2, 13, 1, 6, 8, 13, 11, 16, 6, 8, 1, 8, 1, 12, 11, 3, 2, 16, 10, 16, 1, 0, 8, 13, 2, 8, 13, 12, 13, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 1, 0, 0 ]
95	[ "The", "red", "dots", "represents", "LCI", ",", "the", "bright", "yellow", "rectangle", "represents", "RV", ",", "and", "the", "black", "triangle", "represents", "the", "/TLCnLCI", ".", "LCI", ":", "lung", "clearance", "index", ";", "RV", ":", "the", "ratio", "of", "residual", "volume", "to", "total", "lung", "capacity", ";", "/TLCnLCI", ":", "normalized", "lung", "clearance", "index", "." ]	[ 6, 0, 8, 16, 12, 13, 6, 0, 0, 8, 16, 12, 13, 5, 6, 0, 8, 16, 6, 12, 13, 12, 13, 8, 8, 8, 13, 12, 13, 6, 8, 1, 0, 8, 1, 0, 8, 8, 13, 12, 13, 0, 8, 8, 8, 13 ]	[ 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 0, 3, 4, 4, 0, 1, 0, 3, 4, 4, 4, 4, 4, 4, 4, 4, 0, 1, 0, 3, 3, 4, 4, 0 ]
96	[ "The", "drug", "utilisation", "(", "DU", ")", "90", "%", "methodology", "was", "used", "to", "present", "the", "antibiotics", "accounting", "for", "90", "%", "of", "all", "antibiotics", "prescribed", "[", "19", "]", "." ]	[ 6, 8, 8, 13, 12, 13, 9, 8, 8, 3, 16, 10, 16, 6, 8, 16, 1, 9, 8, 1, 6, 8, 16, 13, 9, 13, 13 ]	[ 0, 3, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
97	[ "AC", "and", "CaM", "peptides", "were", "separated", "over", "an", "8", "-", "min", "gradient", "of", "5%–40", "%", "acetonitrile", "(", "ACN", ")", "at", "40", "μL", "/", "min", "and", "at", "0", "°", "C", "." ]	[ 12, 5, 12, 8, 3, 16, 1, 6, 9, 13, 8, 8, 1, 9, 8, 8, 13, 12, 13, 1, 9, 8, 15, 8, 5, 1, 9, 8, 8, 13 ]	[ 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
98	[ "In", "this", "regard", ",", "the", "concept", "of", "mild", "cognitive", "impairment", "(", "MCI", ")", "is", "interesting", "since", "it", "is", "seen", "as", "a", "transitional", "zone", "between", "normal", "aging", "and", "dementia", "." ]	[ 1, 6, 8, 13, 6, 8, 1, 0, 0, 8, 13, 12, 13, 3, 0, 14, 11, 3, 16, 1, 6, 0, 8, 1, 0, 8, 5, 8, 13 ]	[ 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
99	[ "The", "quantity", "ρ", "is", "the", "atmospheric", "density", "depending", "on", "altitude", "and", "temperature" ]	[ 6, 8, 13, 3, 6, 0, 8, 16, 1, 8, 5, 8 ]	[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3 ]

End of preview. Expand in Data Studio

PLOD: An Abbreviation Detection Dataset

This is the repository for PLOD Dataset published at LREC 2022. The dataset can help build sequence labelling models for the task Abbreviation Detection.

Dataset

We provide two variants of our dataset - Filtered and Unfiltered. They are described in our paper here.

The Filtered version can be accessed via Huggingface Datasets here and a CONLL format is present here.
The Unfiltered version can be accessed via Huggingface Datasets here and a CONLL format is present here.
The SDU Shared Task data we use for zero-shot testing is available here.

Dataset Card for PLOD-unfiltered

Dataset Summary

This PLOD Dataset is an English-language dataset of abbreviations and their long-forms tagged in text. The dataset has been collected for research from the PLOS journals indexing of abbreviations and long-forms in the text. This dataset was created to support the Natural Language Processing task of abbreviation detection and covers the scientific domain.

Supported Tasks and Leaderboards

This dataset primarily supports the Abbreviation Detection Task. It has also been tested on a train+dev split provided by the Acronym Detection Shared Task organized as a part of the Scientific Document Understanding (SDU) workshop at AAAI 2022.

Languages

English

Dataset Structure

Data Instances

A typical data point comprises an ID, a set of tokens present in the text, a set of pos_tags for the corresponding tokens obtained via Spacy NER, and a set of ner_tags which are limited to AC for Acronym and LF for long-forms.

An example from the dataset: {'id': '1', 'tokens': ['Study', '-', 'specific', 'risk', 'ratios', '(', 'RRs', ')', 'and', 'mean', 'BW', 'differences', 'were', 'calculated', 'using', 'linear', 'and', 'log', '-', 'binomial', 'regression', 'models', 'controlling', 'for', 'confounding', 'using', 'inverse', 'probability', 'of', 'treatment', 'weights', '(', 'IPTW', ')', 'truncated', 'at', 'the', '1st', 'and', '99th', 'percentiles', '.'], 'pos_tags': [8, 13, 0, 8, 8, 13, 12, 13, 5, 0, 12, 8, 3, 16, 16, 0, 5, 0, 13, 0, 8, 8, 16, 1, 8, 16, 0, 8, 1, 8, 8, 13, 12, 13, 16, 1, 6, 0, 5, 0, 8, 13], 'ner_tags': [0, 0, 0, 3, 4, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 4, 4, 4, 4, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0] }

Data Fields

id: the row identifier for the dataset point.
tokens: The tokens contained in the text.
pos_tags: the Part-of-Speech tags obtained for the corresponding token above from Spacy NER.
ner_tags: The tags for abbreviations and long-forms.

Data Splits

	Train	Valid	Test
Filtered	112652	24140	24140
Unfiltered	113860	24399	24399

Dataset Creation

Source Data

Initial Data Collection and Normalization

Extracting the data from PLOS Journals online and then tokenization, normalization.

Who are the source language producers?

PLOS Journal

Additional Information

Dataset Curators

The dataset was initially created by Leonardo Zilio, Hadeel Saadany, Prashant Sharma, Diptesh Kanojia, Constantin Orasan.

Licensing Information

CC-BY-SA 4.0

Citation Information

[Needs More Information]

Installation

We use the custom NER pipeline in the spaCy transformers library to train our models. This library supports training via any pre-trained language models available at the :rocket: HuggingFace repository.
Please see the instructions at these websites to setup your own custom training with our dataset to reproduce the experiments using Spacy.

However, you can also reproduce the experiments via the Python notebook we provide here which uses HuggingFace Trainer class to perform the same experiments. The exact hyperparameters can be obtained from the models readme cards linked below. Before starting, please perform the following steps:

git clone https://github.com/surrey-nlp/PLOD-AbbreviationDetection
cd PLOD-AbbreviationDetection
pip install -r requirements.txt

Now, you can use the notebook to reproduce the experiments.

Model(s)

Our best performing models are hosted on the HuggingFace models repository:

Models	`PLOD - Unfiltered`	`PLOD - Filtered`	Description
RoBERTa_large	RoBERTa_large-finetuned-abbr	-soon-	Fine-tuning on the RoBERTa_large language model
RoBERTa_base	-soon-	RoBERTa_base-finetuned-abbr	Fine-tuning on the RoBERTa_base language model
AlBERT_large-v2	AlBERT_large-v2-finetuned-abbDet	-soon-	Fine-tuning on the AlBERT_large-v2 language model

On the link provided above, the model(s) can be used with the help of the Inference API via the web-browser itself. We have placed some examples with the API for testing.

Usage

You can use the HuggingFace Model link above to find the instructions for using this model in Python locally using the notebook provided in the Git repo.